Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0351
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.55 
SB_57625| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_39237| Best HMM Match : adh_short (HMM E-Value=1.6e-11)             29   2.2  
SB_49081| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44)    28   3.8  
SB_59534| Best HMM Match : AA_permease (HMM E-Value=3.1e-05)           28   5.1  
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)                27   6.7  
SB_23339| Best HMM Match : I-set (HMM E-Value=1.3e-07)                 27   6.7  
SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_17429| Best HMM Match : Fibrinogen_C (HMM E-Value=3.1e-34)          27   6.7  
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_59527| Best HMM Match : DUF382 (HMM E-Value=4.1e-26)                27   8.9  

>SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1183

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
 Frame = +2

Query: 227 EAGPVGEQVTTG*GNRTEETAEAAKISQIPVDPDSS--GNADGYPRTGRFQ--GTSPGSS 394
           EA   GE    G      E  EA++ S++    ++S  G A      G     G +  +S
Sbjct: 293 EASEAGEASEVGVAREASEAGEASEASEVGEVSEASEAGEASEAVEAGEASEAGEASKAS 352

Query: 395 WLSFRTSSGDLTETGKHIDVPEASKWLAKLLQ 490
                + +G+ +E G+  +  EAS+ +AKL++
Sbjct: 353 EAGEASEAGEASEAGEAGEASEASEAIAKLVK 384



 Score = 31.1 bits (67), Expect = 0.55
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 227 EAGPVGEQVTTG*GNRTEETAEAAKISQ 310
           EAG +GE    G  N T ET+EA K S+
Sbjct: 616 EAGEIGEASEAGGANETSETSEAGKASE 643


>SB_57625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1751

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 317 VDPDSSGNADGYPRTGRFQGTSPGSSWLSFRTSSGDLTETGKHID 451
           V      +AD + +T +  G+  GSSWLS+R ++ + + T    D
Sbjct: 290 VATQGDASADQWVQTYKLNGSISGSSWLSYRENTLNKSLTSNRND 334


>SB_39237| Best HMM Match : adh_short (HMM E-Value=1.6e-11)
          Length = 305

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 19/86 (22%), Positives = 39/86 (45%)
 Frame = -3

Query: 413 MSGKTAMNSRDWSLGNGQSSGSHRHFLRSQGRQESVIFLQLQQSLRSGFLSLW*LARRLV 234
           +SGK  +++ DW +       +  HF       + ++F    Q+++S   S+      L 
Sbjct: 141 VSGKKFLDTEDWMIQKTMEVNTMAHFWILALNPDYIVFTL--QTVKSFLPSM------LA 192

Query: 233 QPRGHGIRIGDASCLADVPGVLHFCT 156
           +  GH + I  ++    VPG+  +C+
Sbjct: 193 KNHGHVVNIASSAGFFGVPGMCDYCS 218


>SB_49081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 326 DSSGNADGYPRTGRFQGTSPGSSWLSFRTSSGDLTETGKHID 451
           D+ G++D YP+T    G +PG S    +T  G L +T  H D
Sbjct: 100 DTPGHSDSYPQTLDGLGDTPGHSDSHLQTLDG-LGDTPGHSD 140


>SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44)
          Length = 303

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 431 ETGKHIDVPEASKWLAKLLQYNVPNG 508
           E    + + ++ KWL ++L+YNVP G
Sbjct: 35  EEENDLAIGDSIKWLREVLEYNVPGG 60


>SB_59534| Best HMM Match : AA_permease (HMM E-Value=3.1e-05)
          Length = 889

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 220 MASELVTLVVLLMCPAYFIFVRLHKL 143
           +AS   TL VL   P YF+FVR   L
Sbjct: 851 IASSFATLFVLAGIPVYFVFVRFKLL 876


>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
          Length = 3809

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 204  TNSDAMAP-RLDQSASKSPQAEETGPKRLLK 293
            T SD+++P  +  S + SPQ + T PKR+ K
Sbjct: 2241 TRSDSVSPFSIRSSENASPQFDRTDPKRMSK 2271



 Score = 27.1 bits (57), Expect = 8.9
 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
 Frame = +3

Query: 183  ISKTTSVTNSDAMAPRLDQSASKSPQAEETGPKRLLKLQKY---HRFLSTLTPQEMPMAT 353
            IS  +S +++++  PR++ SA  +P  + + PKR+ K + +    R LS    ++ P  T
Sbjct: 2346 ISPASSRSSANS-GPRVEHSAGSTPSFDRSDPKRISKERIFVIKGRRLSVEQDKDKPDGT 2404

Query: 354  RGL 362
            + L
Sbjct: 2405 KTL 2407


>SB_23339| Best HMM Match : I-set (HMM E-Value=1.3e-07)
          Length = 423

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +3

Query: 180 HISKTTSVTNSDAMAPRLDQSASKSP 257
           H  KTTS   SDA   R D  A KSP
Sbjct: 223 HSYKTTSTAQSDAFLNRTDWYAFKSP 248


>SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 852

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +2

Query: 407 RTSSGDLTETGKHIDVPEASKWLAKLL 487
           R+SSGDL  T  H D+ + SK  AK L
Sbjct: 587 RSSSGDLQLTSIHTDLAQGSKLDAKTL 613


>SB_17429| Best HMM Match : Fibrinogen_C (HMM E-Value=3.1e-34)
          Length = 499

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 341 ADGYPRTGRFQGTSPGSSWLSFRTSSGDLT 430
           ADG  R  +F+G S G++ + +R +SG  T
Sbjct: 409 ADGEKRFAQFEGFSVGNATIKYRLTSGIYT 438


>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3762

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +2

Query: 218  HGPEAGPVGE-----QVTTG*GNRTEETAEAAKISQIPVDPDSSGNADGYPRTGRFQ 373
            H  E   VG+     QVT   G RT+ET  A+ I+      DS  ++ G   TG+FQ
Sbjct: 3369 HSTERSAVGQAFQKLQVTEKGGERTKETQSASTIA----IQDSQISSSGRSNTGQFQ 3421


>SB_59527| Best HMM Match : DUF382 (HMM E-Value=4.1e-26)
          Length = 800

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 183 ISKTTSVTNSDAMAPRLDQSASKSPQAEETGPK 281
           I+KT  +T      P   Q A ++PQAEE  PK
Sbjct: 62  IAKTVEITAESPDEPT--QEAQETPQAEEDSPK 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,354,146
Number of Sequences: 59808
Number of extensions: 343867
Number of successful extensions: 1022
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)