Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0351
         (508 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY651259-1|AAT72303.1|   82|Homo sapiens small breast epithelial...    32   1.3  
AB055890-1|BAB62913.1| 2813|Homo sapiens guanine nucleotide exch...    31   3.1  
AK094707-1|BAC04403.1|  157|Homo sapiens protein ( Homo sapiens ...    30   4.0  
BC068516-1|AAH68516.1|  579|Homo sapiens hypothetical protein FL...    29   9.3  
BC016703-1|AAH16703.1|  208|Homo sapiens FLJ20581 protein protein.     29   9.3  
BC013753-1|AAH13753.1|  208|Homo sapiens FLJ20581 protein protein.     29   9.3  
AK000588-1|BAA91273.1|  571|Homo sapiens protein ( Homo sapiens ...    29   9.3  

>AY651259-1|AAT72303.1|   82|Homo sapiens small breast epithelial
           mucin-like protein variant protein.
          Length = 82

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +2

Query: 320 DPDSSGNADGYPRTGRFQGTSPGSSWLSFRTSSGDLTETGKHIDVPEASKWLAKL 484
           +P ++  AD YP TG     +P +   +  T++     T    D+P   KW+  L
Sbjct: 21  NPTTAAPADTYPATGPADDEAPDAETTAAPTTATTAASTTARKDIPVLPKWVGDL 75


>AB055890-1|BAB62913.1| 2813|Homo sapiens guanine nucleotide
           exchange factor Lbc protein.
          Length = 2813

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 23/81 (28%), Positives = 38/81 (46%)
 Frame = +2

Query: 224 PEAGPVGEQVTTG*GNRTEETAEAAKISQIPVDPDSSGNADGYPRTGRFQGTSPGSSWLS 403
           P+ G  G +  +  GNR EET    K S +P D +S  + D   +  R   T PG++  S
Sbjct: 405 PDCGVKGTEGLSSCGNRNEET--GTKSSGMPTDQESLSSGDAVLQ--RDLVTEPGTAQYS 460

Query: 404 FRTSSGDLTETGKHIDVPEAS 466
                G ++ T  ++  P+ +
Sbjct: 461 SGGELGGISTT--NVSTPDTA 479


>AK094707-1|BAC04403.1|  157|Homo sapiens protein ( Homo sapiens
           cDNA FLJ37388 fis, clone BRAMY2026713. ).
          Length = 157

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 19/49 (38%), Positives = 23/49 (46%)
 Frame = -2

Query: 354 G*PSAFPEESGSTGICDIFAASAVSSVRFPQPVVTCSPTGPASGPWHQN 208
           G P   P  SG    C +F  S + S   P   + CS   PASGPW Q+
Sbjct: 41  GPPFPHPSISG-VSFCLLFPPSGLKS---PDLFLKCSRLLPASGPWAQS 85


>BC068516-1|AAH68516.1|  579|Homo sapiens hypothetical protein
           FLJ20581 protein.
          Length = 579

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 165 MKYAGHISKTTSVTNSDAMAPRLDQSASKSPQAE 266
           +KY    S+  S+  SD++APR+D  +++ P  +
Sbjct: 154 LKYRLQASRAKSIITSDSLAPRVDAISAECPSLQ 187


>BC016703-1|AAH16703.1|  208|Homo sapiens FLJ20581 protein protein.
          Length = 208

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 165 MKYAGHISKTTSVTNSDAMAPRLDQSASKSPQAE 266
           +KY    S+  S+  SD++APR+D  +++ P  +
Sbjct: 154 LKYRLQASRAKSIITSDSLAPRVDAISAECPSLQ 187


>BC013753-1|AAH13753.1|  208|Homo sapiens FLJ20581 protein protein.
          Length = 208

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 165 MKYAGHISKTTSVTNSDAMAPRLDQSASKSPQAE 266
           +KY    S+  S+  SD++APR+D  +++ P  +
Sbjct: 154 LKYRLQASRAKSIITSDSLAPRVDAISAECPSLQ 187


>AK000588-1|BAA91273.1|  571|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20581 fis, clone REC00491. ).
          Length = 571

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 165 MKYAGHISKTTSVTNSDAMAPRLDQSASKSPQAE 266
           +KY    S+  S+  SD++APR+D  +++ P  +
Sbjct: 154 LKYRLQASRAKSIITSDSLAPRVDAISAECPSLQ 187


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,578,592
Number of Sequences: 237096
Number of extensions: 1789671
Number of successful extensions: 5359
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5359
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4706589866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)