Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0351
(508 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110479-6|CAB54354.2| 447|Caenorhabditis elegans Hypothetical ... 29 2.6
Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical pr... 28 3.4
AF125972-1|AAD14770.2| 349|Caenorhabditis elegans Hypothetical ... 28 3.4
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n... 27 5.9
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi... 27 5.9
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi... 27 5.9
U70857-11|AAN84874.1| 295|Caenorhabditis elegans Hypothetical p... 27 7.8
U70857-10|AAB09175.1| 385|Caenorhabditis elegans Hypothetical p... 27 7.8
AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein. 27 7.8
AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable abno... 27 7.8
>AL110479-6|CAB54354.2| 447|Caenorhabditis elegans Hypothetical
protein Y105C5B.8 protein.
Length = 447
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 316 RNL*YFCSFSSLFGPVSSACGDLLADWSSLGAMASE 209
R + YFC+F S+F P+ S D+ D L + E
Sbjct: 142 RGVAYFCAFFSIFEPLPSVYKDIQRDGHQLNCSSFE 177
>Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical
protein C11E4.6 protein.
Length = 1170
Score = 28.3 bits (60), Expect = 3.4
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 329 SSGNADGYPRTGRFQGTSPG--SSWLSFRTSSGDLTETGKHIDVPEASKWLAKLL 487
+S D PRTGRF TSP S S + SS L K++ K +A +L
Sbjct: 403 NSSMLDRAPRTGRFPLTSPSYHSKHYSCQRSSDTLPTRLKNVRTRPTEKQIASVL 457
>AF125972-1|AAD14770.2| 349|Caenorhabditis elegans Hypothetical
protein H25P19.1 protein.
Length = 349
Score = 28.3 bits (60), Expect = 3.4
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Frame = +3
Query: 111 QKCSRQRKA*KSLCRRTKMKYAGHISKTTSVTN-SDAMAPRLDQSASKSPQAEETGPKRL 287
Q +Q +A K++ R + T + N SD + Q ++ E P R
Sbjct: 212 QDPKKQTRAQKAMSTRLANLRGSRGGQETDLNNDSDTTSVNSAQESTNGTPMPEPEPSRP 271
Query: 288 LKLQKYHRFLSTLTPQEMPMATRGLAVSKGPVP 386
++ RF TP ++ AT G+++ P P
Sbjct: 272 PRINLKFRF----TPSKLGTATPGISIISSPTP 300
>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 20
protein.
Length = 1254
Score = 27.5 bits (58), Expect = 5.9
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 432 SVRSPDDVRKDSHELPGLVPWKRPVLG*PS-AFPEESGSTG 313
S +P D+R SH+LP + P + P PS P +G G
Sbjct: 282 SQENPRDIRSLSHQLPMIPPQQPPPPQVPSHMLPSSTGQPG 322
>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
nonsense-mediated mRNA decay trans-acting factor
protein.
Length = 1069
Score = 27.5 bits (58), Expect = 5.9
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = -3
Query: 461 LPEHQCACQSQ*DPLTMSGKTAMNSRDWSL-GNGQSSGSH--RHFLRSQGRQ 315
LPEH C DPL ++ T R W N +SG H H +RSQ ++
Sbjct: 90 LPEHACRYCGISDPLCVAKCTV--CRKWFCNSNDGTSGGHIVHHMVRSQHKE 139
>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 2 protein.
Length = 1069
Score = 27.5 bits (58), Expect = 5.9
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = -3
Query: 461 LPEHQCACQSQ*DPLTMSGKTAMNSRDWSL-GNGQSSGSH--RHFLRSQGRQ 315
LPEH C DPL ++ T R W N +SG H H +RSQ ++
Sbjct: 90 LPEHACRYCGISDPLCVAKCTV--CRKWFCNSNDGTSGGHIVHHMVRSQHKE 139
>U70857-11|AAN84874.1| 295|Caenorhabditis elegans Hypothetical
protein C10G8.8b protein.
Length = 295
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 177 GHISKTTSVTNSDAMAPR-LDQSASKSPQAEETGPKRLLK 293
GH K TSVT SD A R + S+ Q ++ G +++ K
Sbjct: 97 GHSEKKTSVTASDGEAQRGQRRRGSQKDQKDQNGKQQIQK 136
>U70857-10|AAB09175.1| 385|Caenorhabditis elegans Hypothetical
protein C10G8.8a protein.
Length = 385
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 177 GHISKTTSVTNSDAMAPR-LDQSASKSPQAEETGPKRLLK 293
GH K TSVT SD A R + S+ Q ++ G +++ K
Sbjct: 187 GHSEKKTSVTASDGEAQRGQRRRGSQKDQKDQNGKQQIQK 226
>AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.
Length = 1040
Score = 27.1 bits (57), Expect = 7.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 336 EMPMATRGLAVSKGPVPGVHGC 401
+ P+ TR +AVS GP+P C
Sbjct: 392 QKPIVTRSIAVSTGPLPAPKPC 413
>AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable
abnormal morphology protein19 protein.
Length = 1040
Score = 27.1 bits (57), Expect = 7.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 336 EMPMATRGLAVSKGPVPGVHGC 401
+ P+ TR +AVS GP+P C
Sbjct: 392 QKPIVTRSIAVSTGPLPAPKPC 413
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,977,666
Number of Sequences: 27780
Number of extensions: 253073
Number of successful extensions: 760
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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