Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0351
(508 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36090.1 68417.m05137 oxidoreductase, 2OG-Fe(II) oxygenase fa... 28 3.1
At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related ... 28 3.1
At1g12940.1 68414.m01503 high-affinity nitrate transporter, puta... 28 3.1
At2g17033.2 68415.m01965 pentatricopeptide (PPR) repeat-containi... 28 4.2
At2g17033.1 68415.m01964 pentatricopeptide (PPR) repeat-containi... 28 4.2
At2g45980.1 68415.m05716 expressed protein 27 5.5
At2g17970.1 68415.m02084 oxidoreductase, 2OG-Fe(II) oxygenase fa... 27 5.5
At1g71440.1 68414.m08253 tubulin folding cofactor E / Pfifferlin... 27 5.5
At5g37380.2 68418.m04492 DNAJ heat shock N-terminal domain-conta... 27 9.6
At5g37380.1 68418.m04491 DNAJ heat shock N-terminal domain-conta... 27 9.6
At3g52525.1 68416.m05776 ovate protein, putative 83% similar to ... 27 9.6
At3g23930.1 68416.m03006 expressed protein 27 9.6
At3g14120.2 68416.m01786 expressed protein similar to Nuclear po... 27 9.6
At3g14120.1 68416.m01785 expressed protein similar to Nuclear po... 27 9.6
At3g09180.1 68416.m01090 expressed protein 27 9.6
At1g79480.1 68414.m09263 hypothetical protein low similarity to ... 27 9.6
>At4g36090.1 68417.m05137 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to At2g17970, At2g17960; contains
PF03171 2OG-Fe(II) oxygenase superfamily domain
Length = 385
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -3
Query: 77 SCLKVSLKKII*WYLIQ*TLVPNSC 3
S KV +K+++ W+++ T VP+SC
Sbjct: 301 SIFKVIIKRLVGWHVLPPTCVPDSC 325
>At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related
contains weak similarity to Swiss-Prot:P10366 ATP
phosphoribosyltransferase [Escherichia coli]
Length = 1402
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 96 RIEVLQKCSRQRKA*KSLCRRTKMKYAGHI 185
R+++L K + RKA SLC +YA H+
Sbjct: 703 RVQILMKNDKFRKAIMSLCNLLSERYARHL 732
>At1g12940.1 68414.m01503 high-affinity nitrate transporter,
putative similar to trans-membrane nitrate transporter
protein AtNRT2:1 [Arabidopsis thaliana] GI:3747058,
high-affinity nitrate transporter ACH1 [Arabidopsis
thaliana] GI:3608362
Length = 502
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 289 SSLF-GPVSSACGDLLADWSSLGAMASELVTLVV 191
SS+F GPV + + A W +LG A++L+ +V
Sbjct: 158 SSMFSGPVVGSANGIAAGWGNLGGGATQLIMPIV 191
>At2g17033.2 68415.m01965 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 505
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 425 LTETGKHIDVPEASKWLAKLLQYNVP 502
L+ G H +P+ WL KL +NVP
Sbjct: 321 LSSYGAHDALPQMGSWLQKLKGFNVP 346
>At2g17033.1 68415.m01964 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 504
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 425 LTETGKHIDVPEASKWLAKLLQYNVP 502
L+ G H +P+ WL KL +NVP
Sbjct: 320 LSSYGAHDALPQMGSWLQKLKGFNVP 345
>At2g45980.1 68415.m05716 expressed protein
Length = 256
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -2
Query: 414 DVRKDSHELPGLVPWKRPVLG*PSAFPEESGSTGICDIFAASAVSSV 274
DV+K +H LP WKR + S + + I +F A+AV+ +
Sbjct: 153 DVKKSTHNLPCEAWWKRRAI---SMYSRTREANAIWSLFFAAAVTGL 196
>At2g17970.1 68415.m02084 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to At2g17960, At4g36090; contains
PF03171 2OG-Fe(II) oxygenase superfamily domain
Length = 507
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -3
Query: 68 KVSLKKII*WYLIQ*TLVPNSC 3
KV ++K+I W+++ T VP+SC
Sbjct: 300 KVIIRKLIKWHVLPPTCVPDSC 321
>At1g71440.1 68414.m08253 tubulin folding cofactor E / Pfifferling
(PFI) almost identical to tubulin folding cofactor E
(Pfifferling; PFI) GI:20514267 from [Arabidopsis
thaliana]; identical to cDNA tubulin folding cofactor E,
GI:20514266
Length = 531
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 256 GDLLADWSSLGAMASELVTLVVL-LMC 179
G+L++DW +GA+ +L L L L C
Sbjct: 169 GNLISDWEEIGALCEQLPALTTLNLSC 195
>At5g37380.2 68418.m04492 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI4 DnaJ
homolog subfamily B member 12 {Mus musculus}; contains
Pfam profile PF00226: DnaJ domain
Length = 431
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 180 HISKTTSVTNSDAMAPRLDQSASK-SPQAEETGP 278
+ +KTT TN+ PR + A K +P A++T P
Sbjct: 150 NFAKTTFTTNARTTTPRNNPPAQKTNPPAQKTNP 183
>At5g37380.1 68418.m04491 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI4 DnaJ
homolog subfamily B member 12 {Mus musculus}; contains
Pfam profile PF00226: DnaJ domain
Length = 431
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 180 HISKTTSVTNSDAMAPRLDQSASK-SPQAEETGP 278
+ +KTT TN+ PR + A K +P A++T P
Sbjct: 150 NFAKTTFTTNARTTTPRNNPPAQKTNPPAQKTNP 183
>At3g52525.1 68416.m05776 ovate protein, putative 83% similar to
ovate protein (GI:23429649) [Lycopersicon esculentum];
contains TIGRFAM TIGR01568 : uncharacterized
plant-specific domain TIGR01568
Length = 159
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 276 PKRLLKLQKY-HRFLSTLTPQEMPMATRGLAVSK 374
PKR ++ H +S+ TP P+AT +AV K
Sbjct: 39 PKRPSSTYRHCHSSISSATPSSTPLATASVAVEK 72
>At3g23930.1 68416.m03006 expressed protein
Length = 224
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -3
Query: 362 QSSGSHRHFLRSQGRQESVIFLQLQQSLR 276
QS G RH ++ + +E V+FLQL+++ R
Sbjct: 23 QSRG-RRHLIKERDEREKVMFLQLKEAER 50
>At3g14120.2 68416.m01786 expressed protein similar to Nuclear pore
complex protein Nup107 (Nucleoporin Nup107) (107 kDa
nucleoporin) (p105) (Swiss-Prot:P52590) [Rattus
norvegicus]
Length = 1077
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = +2
Query: 320 DPDSSGNADGYPRTGRFQGTSPGSSWLSFRTSSGDLTETGKHIDVPEASKWLAKLLQYNV 499
DP++ D + R + TSP LS S L G +I P + L + ++ V
Sbjct: 13 DPEALSVRDQFRRYRKRHSTSPHEEMLSSNVSENRLLYDGHNIHSPTNTALLLENIKEEV 72
Query: 500 PN 505
N
Sbjct: 73 DN 74
>At3g14120.1 68416.m01785 expressed protein similar to Nuclear pore
complex protein Nup107 (Nucleoporin Nup107) (107 kDa
nucleoporin) (p105) (Swiss-Prot:P52590) [Rattus
norvegicus]
Length = 1101
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = +2
Query: 320 DPDSSGNADGYPRTGRFQGTSPGSSWLSFRTSSGDLTETGKHIDVPEASKWLAKLLQYNV 499
DP++ D + R + TSP LS S L G +I P + L + ++ V
Sbjct: 13 DPEALSVRDQFRRYRKRHSTSPHEEMLSSNVSENRLLYDGHNIHSPTNTALLLENIKEEV 72
Query: 500 PN 505
N
Sbjct: 73 DN 74
>At3g09180.1 68416.m01090 expressed protein
Length = 402
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 346 IGIS*GVRVDRNL*YFCSFSSLFGPVSSACGDLLA 242
+G G + L + CSF S+F + CG LLA
Sbjct: 328 LGFGTGTALYSLLLWICSFESVFSKPCTKCGRLLA 362
>At1g79480.1 68414.m09263 hypothetical protein low similarity to
beta-1,3-glucanase-like protein GI:9758115 from
[Arabidopsis thaliana]
Length = 356
Score = 26.6 bits (56), Expect = 9.6
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 363 PVLG*PSAFPEESGSTGICDIFAASAVSSVRFPQPVVTCSPT-GPASGPW 217
PVLG P + P S TG ++ + + +P P+ SP+ P S W
Sbjct: 218 PVLGPPYSEPGPSTPTGSIPSPSSGFLPPIVYPPPMAPPSPSVTPTSAYW 267
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,340,985
Number of Sequences: 28952
Number of extensions: 238373
Number of successful extensions: 749
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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