Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0349
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ...    33   0.030
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   4.5  
SPAC20G4.04c |hus1||checkpoint clamp complex protein Hus1|Schizo...    25   6.0  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    25   7.9  
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    25   7.9  

>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 32.7 bits (71), Expect = 0.030
 Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 3/119 (2%)
 Frame = +3

Query: 105 MSLQWTIIATFLYTEIAVVLLLTLPIASPSR---WQKFFKSKFLAYISGQASIYFXXXXX 275
           M++ + I+   L  EI   ++L+LP+    R         S F   +     I       
Sbjct: 1   MTIYYMIVFMLLMVEIVSFVILSLPLPLKVRRAILNAISNSPFAGRVKHVLKITIICILI 60

Query: 276 XXXXXXXDAIREMQKYSNIEPSDHQHLDAEMQGNMRLFRAQRNFYISGFALFLLVVIRR 452
                    +R  ++Y     +      A        F AQRN Y+ G ALFL +V+ R
Sbjct: 61  LFADSVRRVVRVTKEYDLAIAAPSTTESARSGYKASQFYAQRNLYLCGSALFLSLVVNR 119


>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 135 TSR*LSIADS*FHYFFNTVISYTMQQTIVE 46
           T R +SI D    + F T   YTM+Q  VE
Sbjct: 196 TERLISIPDDEVEFCFLTWFEYTMEQNSVE 225


>SPAC20G4.04c |hus1||checkpoint clamp complex protein
           Hus1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 101 NHESAMDNYRDVSLYRDRSRPPFNFADSQSEQMAEVLQIEISSLHKRAGIYLFSDSH 271
           N E       D+S +  ++R P  F   + +    V  ++ISS+ KR  I  F + H
Sbjct: 204 NPELDPSQVEDISRHPSQTRAPEEFVHMRLDSKDLVNMLKISSVAKRV-IACFCEGH 259


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 146 GIEK-RRDNCPLQTHDFTISLTPLLAIQ 66
           GIE  RRDNCPL ++    +L  +L  Q
Sbjct: 813 GIETVRRDNCPLVSYVIDTALRKMLIDQ 840


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 464 HLNQTTDDDKEEKCKA 417
           +LN  TD+DK +KCK+
Sbjct: 51  YLNFRTDEDKWQKCKS 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,911,956
Number of Sequences: 5004
Number of extensions: 35327
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)