Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0349
         (482 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF304120-1|AAG50233.1|  213|Caenorhabditis elegans 4D656 protein.     104   3e-23
AC024817-36|AAF59580.1|  213|Caenorhabditis elegans Hypothetical...   104   3e-23
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    27   5.4  
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    27   7.1  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    27   7.1  
U41277-5|AAA82476.2|  230|Caenorhabditis elegans Hypothetical pr...    27   9.4  
L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF125965-1|AAL38962.1|  339|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AF304120-1|AAG50233.1|  213|Caenorhabditis elegans 4D656 protein.
          Length = 213

 Score =  104 bits (250), Expect = 3e-23
 Identities = 51/125 (40%), Positives = 73/125 (58%)
 Frame = +3

Query: 105 MSLQWTIIATFLYTEIAVVLLLTLPIASPSRWQKFFKSKFLAYISGQASIYFXXXXXXXX 284
           M+LQWTI+A  LY EIA+   L LP   P+ W K FKS+    ++  A IY         
Sbjct: 1   MTLQWTIVAGVLYAEIAITFTLLLPWIRPTLWSKLFKSRLFTALAKHAHIYSITFGFVLF 60

Query: 285 XXXXDAIREMQKYSNIEPSDHQHLDAEMQGNMRLFRAQRNFYISGFALFLLVVIRRLVQM 464
               D +RE  KY+ +E    +  +++   +MRLFRAQRN YISGFAL L +VI+R++ +
Sbjct: 61  ILFADGVRETMKYNGLEGQMGRTAESDATHHMRLFRAQRNLYISGFALLLWLVIQRIMTL 120

Query: 465 ISQLA 479
           + + A
Sbjct: 121 LGRAA 125


>AC024817-36|AAF59580.1|  213|Caenorhabditis elegans Hypothetical
           protein Y54G2A.18 protein.
          Length = 213

 Score =  104 bits (250), Expect = 3e-23
 Identities = 51/125 (40%), Positives = 73/125 (58%)
 Frame = +3

Query: 105 MSLQWTIIATFLYTEIAVVLLLTLPIASPSRWQKFFKSKFLAYISGQASIYFXXXXXXXX 284
           M+LQWTI+A  LY EIA+   L LP   P+ W K FKS+    ++  A IY         
Sbjct: 1   MTLQWTIVAGVLYAEIAITFTLLLPWIRPTLWSKLFKSRLFTALAKHAHIYSITFGFVLF 60

Query: 285 XXXXDAIREMQKYSNIEPSDHQHLDAEMQGNMRLFRAQRNFYISGFALFLLVVIRRLVQM 464
               D +RE  KY+ +E    +  +++   +MRLFRAQRN YISGFAL L +VI+R++ +
Sbjct: 61  ILFADGVRETMKYNGLEGQMGRTAESDATHHMRLFRAQRNLYISGFALLLWLVIQRIMTL 120

Query: 465 ISQLA 479
           + + A
Sbjct: 121 LGRAA 125


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +3

Query: 321  YSNIEPSDHQHLDAEMQGNMRLFRAQRNFYISGFALFLLVVIRRLVQMISQLAT 482
            ++  EPSD+   D       +LF    N Y++ +A + L +    V + S  +T
Sbjct: 5426 FAGAEPSDYGRADDHDDAMRKLFVMNMNSYLASYASYCLDLKGEAVSVYSACST 5479


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 253  IDACPLM*ARNFDLKNFCHLLGLAIGKVK 167
            +D CP+       L++FC LL   IG VK
Sbjct: 1980 VDQCPMAEGLQQQLRDFCELLVGKIGNVK 2008


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 253  IDACPLM*ARNFDLKNFCHLLGLAIGKVK 167
            +D CP+       L++FC LL   IG VK
Sbjct: 2101 VDQCPMAEGLQQQLRDFCELLVGKIGNVK 2129


>U41277-5|AAA82476.2|  230|Caenorhabditis elegans Hypothetical
           protein C06E4.7 protein.
          Length = 230

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -3

Query: 120 SIADS*FHYFFNTVISYTMQQTIVEEQQTMTKFLG 16
           S+AD   + FFN VIS  M    VEE Q ++  LG
Sbjct: 95  SVADG-VNCFFNKVISKLMDANYVEEIQDLSLQLG 128


>L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical
           protein F44E2.4 protein.
          Length = 1283

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 164 EDDCDLGIEKRRDNC 120
           ++DCD G+++R DNC
Sbjct: 66  DEDCDWGMQQRIDNC 80


>AF125965-1|AAL38962.1|  339|Caenorhabditis elegans Hypothetical
           protein H43I07.3 protein.
          Length = 339

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 99  EIMSLQWTIIATFLYTEIAVVLLLTLPIASPSRWQKFFKSKFL 227
           EI S+Q   +  FL   IAV  L TL  A+P  W +  ++++L
Sbjct: 8   EIFSIQNLCLLGFLVASIAVSSLFTLSYATP--WVRRRRAEYL 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,669,286
Number of Sequences: 27780
Number of extensions: 201630
Number of successful extensions: 507
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)