Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0349
         (482 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08960.1 68414.m00996 cation exchanger, putative (CAX11) simi...    33   0.10 
At3g17780.1 68416.m02268 expressed protein                             31   0.54 
At1g48440.1 68414.m05415 expressed protein                             30   0.94 
At3g11370.1 68416.m01382 DC1 domain-containing protein contains ...    27   5.0  
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH...    27   8.8  
At3g59170.1 68416.m06597 F-box family protein contains F-box dom...    27   8.8  

>At1g08960.1 68414.m00996 cation exchanger, putative (CAX11) similar
           to sodium/calcium exchanger protein [Mus musculus]
           gi|13925661|gb|AAK49407; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 415

 Score = 33.1 bits (72), Expect = 0.10
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +3

Query: 144 TEIAVVLLLTLPIASPSRWQKFFKSKFLAY 233
           T ++V+L LT+P  SPS W +F++S  + +
Sbjct: 168 TPVSVLLNLTIPKPSPSEWSRFYRSANIVF 197


>At3g17780.1 68416.m02268 expressed protein
          Length = 129

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 105 MSLQWTIIATFLYTEIAVVLLLTLP 179
           M+LQW I++  +  E+A+ ++LTLP
Sbjct: 1   MALQWLILSYVVAAEVAIAVILTLP 25


>At1g48440.1 68414.m05415 expressed protein
          Length = 129

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 105 MSLQWTIIATFLYTEIAVVLLLTLP 179
           M+LQW I++  +  E+ + L+LTLP
Sbjct: 1   MALQWLILSYVVAVEVVITLVLTLP 25


>At3g11370.1 68416.m01382 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 589

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 376 LPCISASRCWWSDGSIFEYFCISRIASSRHNTSTPMRIRK*IDACP 239
           L CI  S  +   GSIF+Y   S++   R++ ST  +  +  D CP
Sbjct: 519 LHCIFGSSSYMKPGSIFDY-NYSKLEVLRNSNSTRPQCTRCGDRCP 563


>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
           (MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
           repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
           thaliana}
          Length = 1324

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 321 YSNIEPSDHQHLDAEMQGNMRLFRAQRNFYISG 419
           +SN+    H  LDA    N+ +F   RN   SG
Sbjct: 687 FSNVNEKQHMVLDAAALENLEIFENSRNGGYSG 719


>At3g59170.1 68416.m06597 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 473

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 203 LPSARTGYRQS*KEDDCDLGIEKRRDNCPL 114
           LP  +T Y QS   D+ D+G  K    CP+
Sbjct: 184 LPKLKTLYLQSVMFDENDIGFRKLLSGCPV 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,959,444
Number of Sequences: 28952
Number of extensions: 183246
Number of successful extensions: 433
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)