Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0346
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    39   0.003
U00037-6|AAA50658.1|  419|Caenorhabditis elegans Osmotic avoidan...    33   0.17 
AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical...    30   1.6  
AC006648-10|AAF39859.1|  305|Caenorhabditis elegans Btb and math...    30   1.6  
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U00031-5|AAP68960.1|  534|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical pr...    28   6.4  
L14433-1|AAA27979.1|  398|Caenorhabditis elegans Hypothetical pr...    28   6.4  
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co...    27   8.5  
AF099916-2|AAC68776.1| 1145|Caenorhabditis elegans Hypothetical ...    27   8.5  

>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 24/85 (28%), Positives = 33/85 (38%)
 Frame = +1

Query: 292 TTGRTERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRRSKIASDPETSPARIS 471
           TT  T   +    TT    T  P TT        PT T     + +   + P T+P   +
Sbjct: 225 TTTTTTTTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKPTTTTTTPTTTPTTTT 284

Query: 472 TRTAKTISSRYVTGQTVTVSTRKTT 546
           T T  T +++     T T  T KTT
Sbjct: 285 TPTTTTTTAKTTKSTTTTTKTTKTT 309


>U00037-6|AAA50658.1|  419|Caenorhabditis elegans Osmotic avoidance
           abnormal protein10 protein.
          Length = 419

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
 Frame = +1

Query: 271 KQAPLLDTTGRTERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRRSKIASDPE 450
           K+  LLD +    +KS ++ TT KK +       K +   +P+            AS P+
Sbjct: 11  KKTSLLDPS---PKKSSVIETTTKKTS---GIESKLLPNELPSTGTTGTSGVKNGASSPK 64

Query: 451 TSPARISTRTAKTISSRYVTGQTVTVST---RKTTYLRS 558
           TSPA+ +T T   ++ +     T  +ST   RK T  +S
Sbjct: 65  TSPAKTTTTTTTVVTQKVSNQPTAPISTLPPRKPTAQKS 103


>AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical
           protein F46F5.11 protein.
          Length = 796

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = +3

Query: 273 AGPTLGHYWKNGKEIENTEDYVEEVYDASQYHGQDG-LGAYAYGYQ-TPESAK-VENRVR 443
           +G T+     N  +  N  +Y+++  D  Q +   G +  Y + ++ +PE++K +EN + 
Sbjct: 303 SGLTVSFVPTNAVQFRNAHNYLKDFKDEKQVYEDSGRMIDYLHNWKCSPENSKQIENCI- 361

Query: 444 SGDVTGSYIYKDGKNDLIKVRYWSDRD 524
                     K   NDL+KV+ W ++D
Sbjct: 362 ----------KQLVNDLVKVKLWGEQD 378


>AC006648-10|AAF39859.1|  305|Caenorhabditis elegans Btb and math
           domain containingprotein 5 protein.
          Length = 305

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
 Frame = +3

Query: 282 TLGHYWKNGKEIEN-------TEDYVEEVYDASQYHGQDGLGAYAYGYQTPESA 422
           TL H +KN  ++E+        ED+    ++ S  H ++ LG Y Y Y++ ESA
Sbjct: 9   TLRHIFKNVSQLEDGKYLYSPDEDHFNVDWNMSISHKKEKLGVYFYCYKSEESA 62


>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
           protein F26C11.3 protein.
          Length = 1317

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 27/98 (27%), Positives = 35/98 (35%), Gaps = 1/98 (1%)
 Frame = +1

Query: 241 NTTTRGFAQLKQAPLLDTTGRTERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNL 420
           +TTT     L    LL T   T   S    T     +  P+TT  T      T + +   
Sbjct: 287 STTTSSSTMLSSTTLLTTETETRESSSTGSTQTTTPSTEPSTTITTPMEQSSTVSSVQKT 346

Query: 421 RRSK-IASDPETSPARISTRTAKTISSRYVTGQTVTVS 531
           R S+   S   T P   ST  + T S    T  + T S
Sbjct: 347 RTSEDKPSSSTTVPTSASTSESSTSSPMAETSSSSTTS 384


>U00031-5|AAP68960.1|  534|Caenorhabditis elegans Hypothetical
           protein B0361.11 protein.
          Length = 534

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 394 PTDTK-LPNLRRSKIASDPETSPARISTRTAKTISSRYVTGQTVTVSTRKTTY 549
           P++T  L   RRSK +S   ++ ++ S R+ KT+SS  V+ +  TV+     Y
Sbjct: 480 PSETNDLSAYRRSKSSSSSVSALSKTSVRSKKTLSSESVSKKLDTVNFSDKEY 532


>Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical
           protein T20G5.5 protein.
          Length = 1234

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 347 IRCVPIPRTRRSRCICLRIPNSRI 418
           +RC+   R RRSR +C+ +   R+
Sbjct: 104 VRCLKASRRRRSRRVCIEVEEDRV 127


>L14433-1|AAA27979.1|  398|Caenorhabditis elegans Hypothetical
           protein C50C3.7 protein.
          Length = 398

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 18/66 (27%), Positives = 25/66 (37%)
 Frame = +3

Query: 213 GRTAVLPLIKYNDPRFRTVEAGPTLGHYWKNGKEIENTEDYVEEVYDASQYHGQDGLGAY 392
           GR  ++  IK  D RF+    G   GH    G  ++    Y     D+   HG +  G  
Sbjct: 88  GRKQLIGQIKRIDYRFQRNTMGGLTGHKGSIGVRLQLASPYSIVFVDSHFIHGPENYGKR 147

Query: 393 AYGYQT 410
              Y T
Sbjct: 148 VEQYHT 153


>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore complex
            protein protein7 protein.
          Length = 1217

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 403  TKLPNLRRSKIASDPETSPARISTRTAKTISSRYVTGQTVTVST 534
            T+LP +  +    +P T+ A +ST TA+ + +      + + ST
Sbjct: 906  TELPKISSTLSFGNPTTAAAPVSTATAEAVKTNVFGSNSASAST 949


>AF099916-2|AAC68776.1| 1145|Caenorhabditis elegans Hypothetical
            protein F54C4.3 protein.
          Length = 1145

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 24/102 (23%), Positives = 40/102 (39%)
 Frame = +3

Query: 138  FQIDIEPEEAQKYLNSPPFTDPQLAGRTAVLPLIKYNDPRFRTVEAGPTLGHYWKNGKEI 317
            F   +E EE ++  +  PF +PQ         ++ Y+D     V     +GH      E+
Sbjct: 756  FYTTVEDEEGEEAEHENPFKNPQ---------ILMYDDDGDEVVVEEEIIGHEIDGASEL 806

Query: 318  ENTEDYVEEVYDASQYHGQDGLGAYAYGYQTPESAKVENRVR 443
            + +E   EEV     Y   +    Y   Y   E  K+ + +R
Sbjct: 807  QGSELPDEEVI----YETYEDYPEYGGHYDLEEEHKMHHNMR 844


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,636,214
Number of Sequences: 27780
Number of extensions: 351752
Number of successful extensions: 1146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)