Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0343
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    31   0.11 
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c...    26   4.1  
SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate |Schizosacc...    26   4.1  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    25   5.5  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    25   5.5  
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    25   7.2  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   9.5  
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    25   9.5  

>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
 Frame = +2

Query: 230 RIQVLENLVHCADLSNPTKPLPLYKRWVALLMEEFFQQGDREREHGMDISPM---CDRHN 400
           R  V E  + C    +    L L K  + L      Q  D+  E   ++S     CD+ +
Sbjct: 181 RFPVSECYLACLKACSILAQLFLSKETLMLSFRSLLQTKDQYAEFREELSGATTNCDKLD 240

Query: 401 ATIEKSQVGFIDYIVHPLWETWADLVHPDAQDI 499
            T+ KS +   DY++  L E+W+ +    AQ++
Sbjct: 241 -TLSKSIINIFDYLLSHLPESWSIITEHMAQEL 272


>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 412 FYSSIMSVTHWTDIHAMFTFTIALLEELFHQ*CHPSFIQWQRLS 281
           +Y    S++   +   + TFTI       ++  HPS + WQRLS
Sbjct: 94  YYGDGRSMSKTEEAQTIVTFTIG---SYLYKYTHPSELFWQRLS 134


>SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 211

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 452 LWETWADLVHPDAQDILDTLEENRDYYQSMI 544
           +W    D+  P+ + + DT E    YY+S I
Sbjct: 118 IWRRSYDIAPPNGESLKDTAERVLPYYKSTI 148


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
 Frame = +2

Query: 443 VHPLW-ETWADLVHPDAQDI 499
           +H  W  TW D  HPD + I
Sbjct: 591 IHHFWVHTWFDKTHPDIESI 610


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 203 VLLLDNYTDRIQVLENLVHCA-DLSNPT 283
           +LL+D+YT  ++ +EN+ +   DL N T
Sbjct: 283 ILLIDSYTPHLRAVENIRNSGNDLRNTT 310


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 297 CINDGWHY*WKSSSSKAIVNVNMAW 371
           CIN G H  +K++  +  + +N+ W
Sbjct: 164 CINMGTHKLYKTAQWRVSIGINLLW 188


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 77   EQRQTLRKMVIDMVLSTDMSKHMSLLADLKTMVETK 184
            +Q +    MV+D+ L  D  KH++L + L  + ET+
Sbjct: 1896 DQDELKHYMVVDVNLGEDYIKHITLRSPLLLINETQ 1931


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = -3

Query: 251 DSLILEFYQCSCLAIRHRYPRLSSF 177
           D + ++ ++C+   IRH YP ++ +
Sbjct: 241 DPVYVQHFKCNIGTIRHNYPHINQW 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,295
Number of Sequences: 5004
Number of extensions: 51345
Number of successful extensions: 168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)