Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0343
(544 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 28 4.2
03_06_0413 + 33756151-33756475,33756837-33756945,33757004-337570... 28 4.2
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851... 28 5.5
03_05_0218 + 22058304-22058795 28 5.5
12_02_1280 - 27517683-27517871,27517955-27518029,27518155-275183... 27 7.3
12_02_0985 + 25052753-25053691 27 7.3
10_07_0160 - 13656172-13656476,13656799-13657528 27 7.3
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 27 7.3
03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484 27 7.3
08_01_0406 + 3607088-3607231,3608900-3608996,3609121-3609185,361... 27 9.7
05_05_0038 - 21769936-21770199,21770785-21771198,21771274-217714... 27 9.7
02_04_0060 - 19345316-19345453,19345718-19345849,19345937-193460... 27 9.7
>06_03_1283 -
28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 389 HTLD*YPCHVHVHDRL 342
HT D +PCH H HD L
Sbjct: 916 HTADLHPCHDHDHDNL 931
>03_06_0413 +
33756151-33756475,33756837-33756945,33757004-33757058,
33757059-33757094,33757196-33757282,33757737-33757808
Length = 227
Score = 28.3 bits (60), Expect = 4.2
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = -1
Query: 505 VQNILSVRMYQICPSFPQRMHDIVNETDLRFFYSSIMSVTHWTDIHAMFTFTIALL 338
VQ+I S Q +F ++ + R F SSI+ + +WTDI AM + T L+
Sbjct: 98 VQSISSEGKIQGMQAFTSACALMLLIMNWRLFKSSIILLRYWTDILAMHSETSLLI 153
>09_02_0393 +
8510089-8510274,8510450-8510806,8510889-8511011,
8511209-8511523,8511576-8511682,8512559-8512629,
8512952-8513029,8513390-8513454,8514224-8514274,
8514373-8514414,8514785-8515105,8515154-8517880
Length = 1480
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 340 LEELFHQ*CHPSFIQWQRLSRIAQIGTVY 254
LEEL H C FIQ + R+ +IG +Y
Sbjct: 907 LEELVHMWCALGFIQEDGVKRMEEIGHLY 935
>03_05_0218 + 22058304-22058795
Length = 163
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 58 RESSRGGAKTDPQENGYRHGPLDRYVE-THESAGGSEDDGRNEESRG 195
R ++RGGA+T Q G+R P R AGG ++ SRG
Sbjct: 15 RRTNRGGARTGEQGCGWRSRPAARRRSGAILRAGGRTEEEHGRASRG 61
>12_02_1280 -
27517683-27517871,27517955-27518029,27518155-27518318,
27518424-27518538,27518783-27519074,27519162-27519318,
27519438-27519510,27520309-27520377,27520471-27520694,
27520800-27520981,27521067-27522064,27522335-27522580
Length = 927
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 58 RESSRGGAKTDPQENGYRHGPLDRYVETHESAGGSE-DDGRNEESRG 195
RES R + + ++N R DRY E+ + G E D R++ RG
Sbjct: 304 RESERRSSSSRHKDNERRDRSKDRYKESDKVDSGHERDKTRDDRDRG 350
>12_02_0985 + 25052753-25053691
Length = 312
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -2
Query: 351 RSPCWKNSSISNATHRLYSGNGLVGLLRSAQCTRFSNT*ILSV*LSSNKTPLP 193
R C +NSS SNAT+ + ++ +A C NT ++ ++ +P P
Sbjct: 136 RGDCHRNSSASNATNCSIPAETMSRMVPTASCGAEGNTTASALTCVTSTSPAP 188
>10_07_0160 - 13656172-13656476,13656799-13657528
Length = 344
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = -2
Query: 234 ILSV*LSSNKTPLPATFFVSTIVFRSASRLMCFDISVERTMSITIFLRVCLCSSS*RFT 58
+LS +S + L + +S + RSA RL+C + + +++S T+F+ C S S FT
Sbjct: 58 LLSPLPASVSSSLSSPLSISPSICRSA-RLLCPNSTYFQSLSSTVFIDGCTFSYSCTFT 115
>09_06_0320 -
22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 200 RYPRLSSFRPSSSDPPADSCVSTYLSRG 117
R+P + F + ++PP S V+ YLSRG
Sbjct: 543 RHPNIVLFMGAVTEPPNLSIVTEYLSRG 570
>03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484
Length = 663
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Frame = +2
Query: 209 LLDNYTD-RIQVLENLVHCADLS--NPTKPLPLYK 304
L+ NY +I VL+ L +C+ LS NP++P P +K
Sbjct: 26 LVRNYPHYKIVVLDKLDYCSSLSNLNPSRPSPNFK 60
>08_01_0406 +
3607088-3607231,3608900-3608996,3609121-3609185,
3610268-3610372,3610492-3610554,3610801-3610834,
3610921-3611043,3611269-3611362,3611452-3611497,
3611692-3611759,3611843-3611891,3612032-3612097,
3612443-3612475
Length = 328
Score = 27.1 bits (57), Expect = 9.7
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -1
Query: 466 PSFPQRMHDIVNETDLRFFYSSIMSVTHWTDIHAMFTFTIALLEELFHQ*CHPSFIQWQR 287
P +P HDI +E + M+ W D+ +F F A++ +F C S+I W R
Sbjct: 181 PFYPIIHHDIASEIPIHAQKLQYMAFGSWLDV-VLFLF--AIIYAIFG--CPLSYILWYR 235
>05_05_0038 -
21769936-21770199,21770785-21771198,21771274-21771434,
21771544-21771607,21771682-21771864,21772355-21772520,
21773397-21773528,21775085-21775599
Length = 632
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = +1
Query: 79 AKTDPQENGYRHGPLDRYVETHES----AGGSEDDGRNEESR 192
A T+P+ G DRY E+ + GG++DDG E+R
Sbjct: 561 ADTEPENGGVATCADDRYAESTDDDGVPVGGTDDDGVPVENR 602
>02_04_0060 -
19345316-19345453,19345718-19345849,19345937-19346005,
19346453-19346551,19346702-19346786,19346890-19346990,
19347294-19347362,19347635-19347675,19348343-19348458,
19348546-19348702,19349266-19349474,19349811-19349914,
19350234-19350381,19350463-19350761,19350844-19351377
Length = 766
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 200 RYPRLSSFRPSSSDPPADSCVSTYLSRG 117
R+P + F + + PP S V+ YLSRG
Sbjct: 567 RHPNIVLFMGAVTQPPKLSIVTEYLSRG 594
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,172,875
Number of Sequences: 37544
Number of extensions: 354448
Number of successful extensions: 1139
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -