Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0343
(544 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8241| Best HMM Match : PDEase_I (HMM E-Value=0) 224 4e-59
SB_2333| Best HMM Match : No HMM Matches (HMM E-Value=.) 95 3e-20
SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.) 93 1e-19
SB_25695| Best HMM Match : PDEase_I (HMM E-Value=3.1e-36) 92 3e-19
SB_6007| Best HMM Match : PDEase_I (HMM E-Value=0) 89 3e-18
SB_21890| Best HMM Match : PDEase_I (HMM E-Value=2.5e-07) 57 8e-09
SB_9575| Best HMM Match : PDEase_I (HMM E-Value=0.00012) 57 1e-08
SB_17862| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_44184| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_53580| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_52148| Best HMM Match : EGF (HMM E-Value=0) 29 1.9
SB_56079| Best HMM Match : RnaseH (HMM E-Value=8.1) 29 3.2
SB_38158| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_44021| Best HMM Match : DUF622 (HMM E-Value=0.34) 28 4.3
SB_2105| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_15248| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-21) 27 7.5
SB_16464| Best HMM Match : Clathrin (HMM E-Value=1.6) 27 9.9
>SB_8241| Best HMM Match : PDEase_I (HMM E-Value=0)
Length = 388
Score = 224 bits (547), Expect = 4e-59
Identities = 112/182 (61%), Positives = 141/182 (77%), Gaps = 6/182 (3%)
Frame = +2
Query: 17 VAFKLLQNDGCDIFVNLHEEEQRQTLRKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAG 196
VAF+LLQ++ CDIF NL ++E RQT R+M+I+MVL+TD +KHMSLLA LKTMVETKKVAG
Sbjct: 111 VAFQLLQHEDCDIFENLSKQE-RQTARRMIIEMVLATDNAKHMSLLASLKTMVETKKVAG 169
Query: 197 --SGVLLLDNYTDRIQVLENLVHCADL---SNPTKPLPLYKRWVALLMEEFFQQGDRERE 361
SGVL L+NYTDR+QV + L + T+ ++WV LMEEFF+QGD+ER+
Sbjct: 170 TGSGVLCLENYTDRMQVYGAIAQWYGLRLSTKRTRARTQIRKWVDRLMEEFFRQGDKERD 229
Query: 362 -HGMDISPMCDRHNATIEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEENRDYYQS 538
GM+ISPM DRHNA+IEKSQV FID++ PLWETW +LV PDAQD+LDT+E+NR +Y S
Sbjct: 230 IDGMEISPMMDRHNASIEKSQVVFIDFVAQPLWETWGELVQPDAQDLLDTIEDNRQWYNS 289
Query: 539 MI 544
I
Sbjct: 290 QI 291
>SB_2333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 95.1 bits (226), Expect = 3e-20
Identities = 63/193 (32%), Positives = 101/193 (52%), Gaps = 20/193 (10%)
Frame = +2
Query: 17 VAFKLL-QNDGCDIFVNLHEEEQRQTLRKMVIDMVLSTDMSKHMSLLADL---------K 166
+AFKL ++D +IF NL EE R T+R+ +IDMV++T+M++H L+
Sbjct: 272 LAFKLTARDDKSNIFSNLDVEEFR-TVRQAIIDMVMATEMTRHFEHLSKFVNSINKRRSS 330
Query: 167 TMVETKKV-AGSGV--------LLLDNYTDRIQVLENLVHCADLSNPTKPLPLYKRWVAL 319
+M E V +G G L+ +R + L+ CAD++NP +P L K W
Sbjct: 331 SMDEVHSVHSGRGTPDSNTSTSTALNTPENRTLIKRMLIKCADIANPARPRYLCKEWAYR 390
Query: 320 LMEEFFQQGDREREHGMD-ISPMCDRHNATIEKSQVGFIDYIVHPLWETWADLVHPDAQD 496
+ EE+F Q D E+ G+ + P+ DR + +SQV FIDY V L++ W + +
Sbjct: 391 IAEEYFSQTDEEKRRGLPVVMPVFDRATCNVPRSQVWFIDYFVSDLYDAWDAFAY--VPE 448
Query: 497 ILDTLEENRDYYQ 535
+ L +N DY++
Sbjct: 449 TIRHLTDNYDYWK 461
>SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1076
Score = 93.1 bits (221), Expect = 1e-19
Identities = 50/175 (28%), Positives = 97/175 (55%)
Frame = +2
Query: 17 VAFKLLQNDGCDIFVNLHEEEQRQTLRKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAG 196
VAF +++ D +I N+ E ++ +R+ +I +LSTDM++H +L K +++
Sbjct: 881 VAFDIMKQDKSNILQNVSAETFKK-IREGMIKCILSTDMARHSDILNKFKELLK------ 933
Query: 197 SGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYKRWVALLMEEFFQQGDREREHGMDI 376
SG D+ + +++ ++ +D+SN +P+ + + W+ L++EFF Q D E+ G+ +
Sbjct: 934 SG-FKFDDEAHKSMLMQIMIKVSDVSNEARPMDVAEPWLDCLLQEFFIQSDVEKLEGLPV 992
Query: 377 SPMCDRHNATIEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEENRDYYQSM 541
+P DR T +Q+GFI +++ PL+E +L I+ + + DYY M
Sbjct: 993 APFMDRDKVTKPSAQIGFIKFVLVPLFEALGELFPILEDHIVSPVRKALDYYVGM 1047
>SB_25695| Best HMM Match : PDEase_I (HMM E-Value=3.1e-36)
Length = 646
Score = 91.9 bits (218), Expect = 3e-19
Identities = 47/111 (42%), Positives = 70/111 (63%)
Frame = +2
Query: 92 LRKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADL 271
+R ++ID VL+TDMS H L +K + VAGS + + +V++ L+H AD+
Sbjct: 546 VRSLMIDTVLATDMSSHFEQLRLMKVAL----VAGSPI-------ENREVVQLLLHVADI 594
Query: 272 SNPTKPLPLYKRWVALLMEEFFQQGDREREHGMDISPMCDRHNATIEKSQV 424
SNPTK ++++W +MEEFF QGD E E G+D+SP+CDR I +SQ+
Sbjct: 595 SNPTKDWTIHRQWTTKIMEEFFTQGDMEIELGLDVSPLCDRSTTLIPESQI 645
>SB_6007| Best HMM Match : PDEase_I (HMM E-Value=0)
Length = 511
Score = 88.6 bits (210), Expect = 3e-18
Identities = 48/151 (31%), Positives = 83/151 (54%)
Frame = +2
Query: 20 AFKLLQNDGCDIFVNLHEEEQRQTLRKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGS 199
AF LL +D F+ + + R + I+ +L+TD+ +H +L+D K A
Sbjct: 254 AFTLLMSDPKYNFLCELSPAEFKRFRFLAIEAILATDLKRHFDILSDFNA-----KTAEG 308
Query: 200 GVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYKRWVALLMEEFFQQGDREREHGMDIS 379
GV D+ DR+ L+ + +D+S P+K ++ W ++EEF++QGD ER GM +S
Sbjct: 309 GVNW-DSEADRLLTLQFCIKMSDISGPSKRRDIHTLWTERIVEEFYEQGDDERARGMAVS 367
Query: 380 PMCDRHNATIEKSQVGFIDYIVHPLWETWAD 472
P DR + + Q FI+++V PL+ ++A+
Sbjct: 368 PYMDRQQPHVAQLQDSFINHLVAPLYNSYAN 398
>SB_21890| Best HMM Match : PDEase_I (HMM E-Value=2.5e-07)
Length = 229
Score = 57.2 bits (132), Expect = 8e-09
Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Frame = +2
Query: 215 DNYTDRIQVLENLVHCADLSNPTKPLPLYKRWVALLMEEFFQQGDREREH-GMDISPMCD 391
DN + ++ + ++ D++ TKP + + ++ EFF QGD E+E + PM D
Sbjct: 20 DNNRELLRAM--MMTACDVAAITKPWEIQRVVAEMVASEFFDQGDLEKEKLNAEPIPMMD 77
Query: 392 RHNAT-IEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEENRDYYQSM 541
R + QVGFID+I P++E + L P + +LD + NR ++Q +
Sbjct: 78 RRKKNELPSMQVGFIDFICLPIYELFYKL-EPSLKPLLDGCQSNRRHWQEL 127
>SB_9575| Best HMM Match : PDEase_I (HMM E-Value=0.00012)
Length = 286
Score = 56.8 bits (131), Expect = 1e-08
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Frame = +2
Query: 251 LVHCADLSNPTKPLPLYKRWVALLMEEFFQQGDREREH-GMDISPMCDRHNAT-IEKSQV 424
++ D++ TKP + + ++ EFF QGD E+E + PM DR + QV
Sbjct: 2 MMTACDVAAITKPWEIQRVVAEMVASEFFDQGDLEKEKLNAEPIPMMDRRKKNELPSMQV 61
Query: 425 GFIDYIVHPLWETWADLVHPDAQDILDTLEENRDYYQSM 541
GFID+I P++E + L P + +LD + NR ++Q +
Sbjct: 62 GFIDFICLPIYELFYKL-EPSLKPLLDGCQSNRRHWQEL 99
>SB_17862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 52.8 bits (121), Expect = 2e-07
Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 2/143 (1%)
Frame = +2
Query: 29 LLQNDGCDIFVNLHEEEQRQTLRKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVL 208
+L+++G ++F L E R+ L +++ + +++TD+ +L+T+ E K
Sbjct: 462 ILESEGQNVFGQLDAESYRRVL-ELIQEAIIATDLMLFFGNKKELETLQENKAFRWEE-- 518
Query: 209 LLDNYTDRIQVLENLVHCADLSNPTKPLPLYKRWVALLMEEFFQQGDREREHGMDISPMC 388
+ + I+ L L+ DL KP + V + EEF+ QGD ER+ G+D PM
Sbjct: 519 --EKHRSLIRCL--LMTACDLCTSAKPWDIQVVAVNKVFEEFYIQGDEERKMGLDPLPMM 574
Query: 389 DR-HNATIEKSQVGFIDYI-VHP 451
DR + + ++Q Y+ HP
Sbjct: 575 DRSKHDDLPENQATVYGYMETHP 597
>SB_44184| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 49.6 bits (113), Expect = 2e-06
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Frame = +2
Query: 251 LVHCADLSNPTKPLPLYKRWVALLMEEFFQQGDRERE-HGMDISPMCDRHNA-TIEKSQV 424
++ DL+ PTKP + K V L+ EFF+QG ERE + M+ + DR + K QV
Sbjct: 2 MMTACDLNGPTKPWEIQKEVVNLVPREFFEQGAMERERYNMEPMAIMDRQKIDELPKLQV 61
Query: 425 GFIDYIVHPLWETWADLVHPDAQDILDTLEENRDYYQSM 541
F + P+++ A L + Q ++D E N+ +Q +
Sbjct: 62 QFFETTGLPVFKVLAKL-NNKLQPLVDGAESNKRRWQKL 99
>SB_53580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 940
Score = 31.5 bits (68), Expect = 0.46
Identities = 23/102 (22%), Positives = 45/102 (44%)
Frame = +2
Query: 116 VLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLP 295
+L T + KH +L LKT+ +A S + + DR +L + + NP + +
Sbjct: 153 ILVTSIIKHTALFHILKTLEIVSNIAFSANSMYLSEQDRYPLLFRTCYTESIGNPAR-IA 211
Query: 296 LYKRWVALLMEEFFQQGDREREHGMDISPMCDRHNATIEKSQ 421
+ KR+ + +Q + + M D++N T+ S+
Sbjct: 212 ILKRYGWKNVATVYQNEGLFTLTAIHLREMLDKNNFTVISSE 253
>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
Length = 1055
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = -2
Query: 408 IVALCLSHIGLI----SMPCS-RSRSPCWKNSSISNATHRLY 298
I A C+ H+G + ++ C+ S SPC NS N T++LY
Sbjct: 648 INASCVLHVGYVICGLNVTCNGTSTSPCINNSCHGNGTNKLY 689
>SB_56079| Best HMM Match : RnaseH (HMM E-Value=8.1)
Length = 264
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 94 QENGYRHGPLDRYVETHESAGGSEDDGRNEESR 192
++N R G +D ET + G+E+DG EE+R
Sbjct: 211 KQNKRRAGEVDHDDETDNAPVGAENDGEKEETR 243
>SB_38158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 50 DIFVNLHEEEQRQTLRKMVIDMVLSTDMSKHMSLLADLKTMVETK 184
D+ ++ + QT + DM TDM HM D++T ++T+
Sbjct: 144 DMQTHMQTQTDMQTDMQTQTDMQTQTDMQTHMQTQTDMQTDMQTQ 188
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 80 QRQTLRKMVIDMVLSTDMSKHMSLLADLKTMVETK 184
Q QT + DM TDM HM D++T ++T+
Sbjct: 128 QTQTDMQTQTDMQTQTDMQTHMQTQTDMQTDMQTQ 162
>SB_44021| Best HMM Match : DUF622 (HMM E-Value=0.34)
Length = 572
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 485 DAQDILDTLEENRDYYQSMI 544
++ DILDTL+ ++YY MI
Sbjct: 250 ESSDILDTLKRTKEYYDEMI 269
>SB_2105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 484
Score = 28.3 bits (60), Expect = 4.3
Identities = 17/74 (22%), Positives = 34/74 (45%)
Frame = +2
Query: 50 DIFVNLHEEEQRQTLRKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTD 229
D+++ E+ +R TL + LST++ K +S + + K G ++ N D
Sbjct: 266 DVYIGAVEDSRRNTLEPTLQAASLSTEVFKKLSQVVQQYDNGKLKGQNNKGKVMAIN-AD 324
Query: 230 RIQVLENLVHCADL 271
+Q + C+D+
Sbjct: 325 HLQAFNIIAVCSDV 338
>SB_15248| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-21)
Length = 325
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 387 VTDIMLL*KNLKSV--SLTISCILCGKLGQIWYILTL 491
+ D++ L NLK + LT SCI LG + ILT+
Sbjct: 31 IQDLLKLDANLKPIFTGLTFSCIAIALLGNMLIILTI 67
>SB_16464| Best HMM Match : Clathrin (HMM E-Value=1.6)
Length = 482
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 412 KISSRFH*LYRASSVGNLGRFG 477
++SS+F L R SSV N G+FG
Sbjct: 55 RLSSKFRGLERRSSVENFGQFG 76
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,350,945
Number of Sequences: 59808
Number of extensions: 391607
Number of successful extensions: 1259
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -