Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0343
         (544 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03730.2 68418.m00334 serine/threonine protein kinase (CTR1) ...    29   2.7  
At5g03730.1 68418.m00333 serine/threonine protein kinase (CTR1) ...    29   2.7  
At5g58000.1 68418.m07256 phosphatase-related weak similarity to ...    28   3.5  
At1g61040.1 68414.m06872 plus-3 domain-containing protein contai...    28   3.5  
At5g28550.1 68418.m03483 hypothetical protein                          28   4.6  
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ...    28   4.6  
At5g39930.1 68418.m04842 expressed protein ; expression supporte...    27   6.1  
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ...    27   8.1  
At3g49800.1 68416.m05445 BSD domain-containing protein contains ...    27   8.1  
At1g22060.1 68414.m02759 expressed protein                             27   8.1  

>At5g03730.2 68418.m00334 serine/threonine protein kinase (CTR1)
           identical to serine/threonine-protein kinase CTR1
           [Arabidopsis thaliana] SWISS-PROT:Q05609
          Length = 821

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 236 EFYQCSCLAIRHRYPRLSSFRPSSSDPPADSCVSTYLSRG 117
           EF +   +  R R+P +  F  + + PP  S V+ YLSRG
Sbjct: 592 EFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRG 631


>At5g03730.1 68418.m00333 serine/threonine protein kinase (CTR1)
           identical to serine/threonine-protein kinase CTR1
           [Arabidopsis thaliana] SWISS-PROT:Q05609
          Length = 821

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 236 EFYQCSCLAIRHRYPRLSSFRPSSSDPPADSCVSTYLSRG 117
           EF +   +  R R+P +  F  + + PP  S V+ YLSRG
Sbjct: 592 EFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRG 631


>At5g58000.1 68418.m07256 phosphatase-related weak similarity to CTD
           phosphatase-like 3 [Arabidopsis thaliana] GI:22212705;
           contains Pfam profiles PF02453: Reticulon, PF00533:
           BRCA1 C Terminus (BRCT) domain, PF03031: NLI interacting
           factor
          Length = 1011

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = -3

Query: 254 RDSLIL----EFYQCSCLAIRHRYPRLSSFRPSSSDPPADSCVSTYL 126
           +D+LI+     F+  SC    HRY  LS  +   S+P  D  ++T L
Sbjct: 834 KDNLIVIERYHFFSSSCRQFDHRYKSLSELKSDESEP--DGALATVL 878


>At1g61040.1 68414.m06872 plus-3 domain-containing protein contains
           Pfam profile PF03126: Plus-3 domain
          Length = 643

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 97  ENGYRHGPLDRYVETHESAGGSEDDGRNEESR 192
           E GY  GP DR  ++ E +   +D  +NEE R
Sbjct: 79  EGGYGDGPSDREGDSSEESDFGDDLYKNEEDR 110


>At5g28550.1 68418.m03483 hypothetical protein
          Length = 286

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
 Frame = +2

Query: 47  CDIFVNLHEEEQRQTLRKMVIDMVLSTDMSKHMSLLADLKT--MVETKKVAGSGVLLLDN 220
           C I+VN  +  +    ++ +ID V S   SK    L +L      ET+K+    V +L+N
Sbjct: 174 CQIYVNKSDLSEDCLPKEAIIDFV-SEACSKSAFYLDNLHQHGARETEKLH---VFILEN 229

Query: 221 YTDRIQVLENLVHCADLSNPTKPLPLYKRWVALLMEEFFQQGDREREHGM 370
           + +   +++ L           P P+ K+WV L+ E F     R    GM
Sbjct: 230 WPEAEDLIKKL---------PDPTPIVKQWVKLVHELFLGCAQRCSRVGM 270


>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
           protein / LIM domain-containing protein weak similarity
           to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
           [Mus musculus] GI:664955; contains Pfam profiles
           PF02809: Ubiquitin interaction motif, PF00412: LIM
           domain
          Length = 532

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 350 REREHGMDISPMCDRHNATIEKSQVGFIDYIVHPLW 457
           RER H     P CD  +  I  +  G I+Y  HP W
Sbjct: 225 RERYH-----PKCDVCSHFIPTNHAGLIEYRAHPFW 255


>At5g39930.1 68418.m04842 expressed protein ; expression supported
           by MPSS
          Length = 423

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
 Frame = +2

Query: 83  RQTLRKMVIDMVLSTDMSK-HMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVH 259
           + TL KM+++  +        + L     ++     +A + + +L +  +   + + L+H
Sbjct: 126 KSTLAKMLLNWAVKDGWKPTFVDLNVGQSSITIPGTIAAAPIKMLVDPVEGFPLDKALIH 185

Query: 260 CADLSNPTKPLPLYKRWVALL---MEEFFQQGDREREHGMDISPM 385
              L+NP+  L LY+  V  L   ++E F      R  GM I  M
Sbjct: 186 YFGLTNPSVNLRLYRTLVEELARELKEEFSANAESRASGMVIDTM 230


>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 783

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 73  GGAKTDPQENGYRHGPLDRYVETHESAGGSEDDGRNEESRG 195
           G A+TD Q+   R+ P+D  VE      G +DDG   E  G
Sbjct: 204 GKAETDGQDADIRYFPIDGDVEA--GGVGKDDDGDAMEVEG 242


>At3g49800.1 68416.m05445 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 428

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +2

Query: 434 DYIVHPLWETWADLVHPDAQDILDTLEENRDYYQ 535
           D  +HP  ETW D   PD  D  D  E     Y+
Sbjct: 175 DLALHP--ETWLDFPFPDEDDNFDDFEMTDAQYE 206


>At1g22060.1 68414.m02759 expressed protein
          Length = 1999

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 455  WETWADLVHPDAQDILDTLEENRD 526
            WET+AD +H D  ++L    ++R+
Sbjct: 1230 WETYADKLHKDHFEVLTAFNDSRN 1253


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,794,005
Number of Sequences: 28952
Number of extensions: 275027
Number of successful extensions: 859
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)