Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0342
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    26   4.0  
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    26   4.0  
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   5.2  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    25   6.9  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    25   9.1  

>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 269 TVQNYFSTNTGFNKKNPSVTPLPTSEKKTI 358
           +VQNYF T     K  PSV PL   E + I
Sbjct: 484 SVQNYFDTKDVAIKLFPSVVPLLIDENEGI 513


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 630 IRSLCHNTIFISSKTDNTVNV 568
           +RSL  +++FIS+  DNTV +
Sbjct: 203 VRSLESSSVFISASADNTVGI 223


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -1

Query: 491 YSDAVTIAP*SELVLTRLLKMEAVHFFFNFN*PNSIVCYTAAREISFFFHW 339
           Y + V +A     ++ RLL +  +  F N+     IVCY        FF W
Sbjct: 16  YGECVRVAKEKYKIIHRLLYISIIFLFLNY--VVDIVCYVKNYNGFSFFCW 64


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 133 SNDFPATRRRRPLAVQLTN 77
           SN FPAT    PL + LTN
Sbjct: 359 SNGFPATSVSPPLTIDLTN 377


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -3

Query: 627 RSLCHNTIFISSKTDNTVNVS*LRLIKNPTINCDFVRQERTLFLSLQRC 481
           +SL H   F ++K+D  VN+  + ++ N  ++   V    ++F    RC
Sbjct: 273 KSLIH---FFAAKSDTPVNLEYISVVLNQILDWTPVELRHSIFFCCLRC 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,616
Number of Sequences: 5004
Number of extensions: 46972
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)