Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0342
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0023 - 18447015-18447410,18448156-18448308,18448679-184495...    29   3.1  
03_02_0882 - 12121917-12124446,12124739-12124919,12125057-121251...    29   4.1  
03_05_0443 - 24379756-24379794,24379896-24379967,24380054-243801...    27   9.4  

>11_05_0023 -
           18447015-18447410,18448156-18448308,18448679-18449524,
           18449688-18449702
          Length = 469

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 375 VTDYTIRLIEIKKKMYCFHF*KSCQYKLTLRSDCNGIAVM 494
           +T   +R ++I ++  C    KSC  +  L SDC+ I V+
Sbjct: 160 LTSLRLRSVKITEEELCGFLSKSCALQRLLLSDCHNIVVL 199


>03_02_0882 -
           12121917-12124446,12124739-12124919,12125057-12125134,
           12125731-12125764,12125864-12125975,12126053-12126238,
           12126505-12126575
          Length = 1063

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +3

Query: 306 IKKTRRLHHCLPVKKKRYFSGGGVTDYTIRLIEIKKKMYCFHF 434
           +++TR+ H  L  K++R   GG ++      I +++++ CF F
Sbjct: 110 LEETRKFHQSLYSKEQRNPMGGALSGGVFGTIGVEQQVNCFSF 152


>03_05_0443 -
           24379756-24379794,24379896-24379967,24380054-24380161,
           24380264-24380373,24381500-24381605
          Length = 144

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 281 YFSTNTGFNKKNPSVTPLPTS 343
           ++ TNTG N   P+ +P+PTS
Sbjct: 66  HYITNTGMNTVAPTPSPMPTS 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,018,375
Number of Sequences: 37544
Number of extensions: 283804
Number of successful extensions: 518
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)