Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0342
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13756| Best HMM Match : Phospholip_A2_1 (HMM E-Value=2.1)           30   1.4  
SB_29838| Best HMM Match : EGF (HMM E-Value=1.2e-15)                   28   5.5  
SB_252| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.3  
SB_34869| Best HMM Match : Phage_integrase (HMM E-Value=0.087)         27   9.7  
SB_30869| Best HMM Match : DUF164 (HMM E-Value=0.18)                   27   9.7  

>SB_13756| Best HMM Match : Phospholip_A2_1 (HMM E-Value=2.1)
          Length = 310

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +3

Query: 285 LARIRGLIKKTRRLHHCLPVKKKRYFSGGGVT-DYTIRLIEIKKKMYCFHF*KSC 446
           LA+   L+K T +    L  K +R+FS    T D++ R    + K++C+HF K C
Sbjct: 162 LAKYMSLLKDTIKAGR-LYKKVERWFSEKKKTEDFSYRFTGKESKLFCWHFMKIC 215


>SB_29838| Best HMM Match : EGF (HMM E-Value=1.2e-15)
          Length = 373

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 479 RHRCNDRNNVRSCRTKSQF 535
           + RC D  N RS RTKS+F
Sbjct: 13  QRRCEDHRNTRSYRTKSRF 31


>SB_252| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 127 RYFDLKVLVTRS*NSLKKKENRYSNKAPFHGVDRSGSECC 246
           R  D+++L  RS N +   +NR  N    H V      CC
Sbjct: 97  RGIDIRILYKRSRNVITHAQNRTENAFQLHEVTLESIYCC 136


>SB_34869| Best HMM Match : Phage_integrase (HMM E-Value=0.087)
          Length = 897

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = -2

Query: 346 FTGRQWCNRRVFFIKPRIRAKIILYCYY*G---RHACNTHCRFDRP 218
           F GR W N    F +    AK+  +CY+ G    H C T+C  + P
Sbjct: 241 FAGRVWLNYDRAFREHAAAAKLTDWCYFPGCRYTHQC-TYCDGNHP 285


>SB_30869| Best HMM Match : DUF164 (HMM E-Value=0.18)
          Length = 442

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +3

Query: 282 ILARIRGL-IKKTRRLHHCLPVKK 350
           +LAR+R +  KKT  LHHC  ++K
Sbjct: 304 LLARLREMQFKKTEELHHCKGLEK 327


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,926,413
Number of Sequences: 59808
Number of extensions: 345896
Number of successful extensions: 659
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)