Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0341
         (563 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    46   8e-04
UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    36   0.65 

>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 45.6 bits (103), Expect = 8e-04
 Identities = 22/33 (66%), Positives = 25/33 (75%)
 Frame = +1

Query: 187 MGDGNHSPSGGPYARLPTRAIKKNIHSLTICIM 285
           MGDGNHSPSG PYA LPTRA K  + SL I ++
Sbjct: 1   MGDGNHSPSGRPYASLPTRA-KMKLTSLFIFVI 32


>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 35.9 bits (79), Expect = 0.65
 Identities = 16/18 (88%), Positives = 16/18 (88%)
 Frame = +3

Query: 144  GRQRLGSAPCTAEVHGRR 197
            GRQRLGSAP  AEVHGRR
Sbjct: 969  GRQRLGSAPGIAEVHGRR 986


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 614,305,329
Number of Sequences: 1657284
Number of extensions: 12925297
Number of successful extensions: 28697
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28684
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37904934977
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)