Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0341
         (563 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1461 - 26700613-26700621,26700784-26700851,26701778-267019...    29   3.4  
01_06_1749 - 39636951-39638102                                         29   3.4  
06_03_0982 + 26553578-26553762,26553865-26554006,26554123-26554137     28   4.5  
09_04_0713 - 19675437-19675551,19675872-19676017,19676226-196762...    28   5.9  
07_03_1525 + 27448257-27448582,27450741-27450973,27451280-274529...    27   7.8  
07_03_1523 + 27432991-27433199,27433585-27434185,27434468-274346...    27   7.8  

>07_03_1461 -
           26700613-26700621,26700784-26700851,26701778-26701919,
           26702011-26702318,26702415-26702481,26702543-26702664,
           26702763-26702815,26702924-26703006,26703092-26703160,
           26703235-26703633
          Length = 439

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
 Frame = -1

Query: 251 FIALVGRRAYGPPDGEWLPSP-----MDFSSARGRAKPLPTD 141
           FIA +  R   P  G   P P      D S A+GR++P+P+D
Sbjct: 326 FIAAMLARPSNPESGPGRPQPRTKQHQDASPAQGRSQPMPSD 367


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 504 SSIVTTAAPPFKPKRITA 451
           SS+ + AAPPF P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181


>06_03_0982 + 26553578-26553762,26553865-26554006,26554123-26554137
          Length = 113

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 125 GKVCKHR*AAAWLC 166
           GK C+HR A AWLC
Sbjct: 91  GKPCRHRRAIAWLC 104


>09_04_0713 -
           19675437-19675551,19675872-19676017,19676226-19676259,
           19676333-19676473,19676860-19676924,19677022-19677108,
           19677186-19677254,19677457-19677548,19677781-19677853,
           19678129-19678205,19678490-19678684,19678804-19678861,
           19679423-19679517,19680071-19680191
          Length = 455

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 41  H*WKRGFYGGGDVEYVGGS 97
           H  KR FYGG DV+ + GS
Sbjct: 366 HMGKRDFYGGSDVQSISGS 384


>07_03_1525 +
           27448257-27448582,27450741-27450973,27451280-27452919,
           27453129-27453575
          Length = 881

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 342 CP-LNHITLHPSIFNLEISRHYTNC 271
           CP +  + L  SI+ +E + HY NC
Sbjct: 795 CPGIRRVVLEQSIYMMEYNSHYANC 819


>07_03_1523 + 27432991-27433199,27433585-27434185,27434468-27434642,
            27434686-27436418,27436871-27437317
          Length = 1054

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 342  CP-LNHITLHPSIFNLEISRHYTNC 271
            CP +  + L  SI+ +E + HY NC
Sbjct: 968  CPGIRRVVLEQSIYMMEYNSHYANC 992


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,430,008
Number of Sequences: 37544
Number of extensions: 395042
Number of successful extensions: 850
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)