Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0341
         (563 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 490 NGCPTLQTETHYCFTSNLIEVQLKTSNYR 404
           NG   +Q ETH CF S L +       YR
Sbjct: 382 NGAELMQ-ETHVCFFSLLRDAFTSKGEYR 409


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 336  LNHITLHPSIFNLEISRHYTNCE 268
            L++ T H ++  L++SRH T+ E
Sbjct: 1439 LHYRTAHGNLDELQLSRHATSHE 1461


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 336  LNHITLHPSIFNLEISRHYTNCE 268
            L++ T H ++  L++SRH T+ E
Sbjct: 1435 LHYRTAHGNLDELQLSRHATSHE 1457


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 242 LVGRRAYGPPDGEWLP 195
           L+G R   PP  +W P
Sbjct: 408 LIGSRRTSPPPEDWKP 423


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 218 PPDGEWLPSPMDFSSARG 165
           PPD  W P  + F++A G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,526
Number of Sequences: 438
Number of extensions: 3966
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)