Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0341
         (563 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04520.1 68414.m00443 33 kDa secretory protein-related contai...    29   2.8  
At2g33330.1 68415.m04085 33 kDa secretory protein-related contai...    28   3.7  
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli...    28   5.0  
At1g51210.1 68414.m05760 UDP-glucoronosyl/UDP-glucosyl transfera...    28   5.0  
At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase, c...    28   5.0  
At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase, c...    28   5.0  

>At1g04520.1 68414.m00443 33 kDa secretory protein-related contains
           Pfam PF01657: Domain of unknown function, duplicated in
           33 KDa secretory proteins
          Length = 307

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -3

Query: 198 TVAHGLQQCKGQ-SQAAAYRCLQTLPCLNCSLC 103
           T   GL QC+G  S    Y C+  LP L+  LC
Sbjct: 82  TTITGLFQCRGDLSNHDCYNCVSRLPVLSDKLC 114


>At2g33330.1 68415.m04085 33 kDa secretory protein-related contains
           Pfam PF01657: Domain of unknown function, duplicated in
           33 KDa secretory proteins
          Length = 304

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -3

Query: 198 TVAHGLQQCKGQ-SQAAAYRCLQTLPCLNCSLC 103
           T   GL QC+G  S    Y C+  LP L+  LC
Sbjct: 84  TSVTGLFQCRGDLSNNDCYNCVSRLPVLSGKLC 116


>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
           helicase, putative 
          Length = 2172

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 248 IALVGRRAYGPPDGEWLP-SPMDFSSARGRA 159
           + + G + Y P  GEW+  SP+D     GRA
Sbjct: 851 VIIKGTQVYNPERGEWMELSPLDVMQMIGRA 881


>At1g51210.1 68414.m05760 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 433

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 173 ARGRAKPLPTDVYKLCLASIVHCVIQTPRHIPH 75
           A+G   PL    ++LCL  +   +I TP+++P+
Sbjct: 28  AQGHLLPLLDLTHQLCLRGLTVSIIVTPKNLPY 60


>At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase,
           chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
           Glycerol-3-phosphate acyltransferase, chloroplast
           precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
           thaliana}; contains Pfam profile PF01553:
           Acyltransferase
          Length = 459

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 236 GRRAYGPPDGEWLPSPMDFSS 174
           GR    P  GEW P+P D SS
Sbjct: 324 GRDRPNPSTGEWFPAPFDASS 344


>At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase,
           chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
           Glycerol-3-phosphate acyltransferase, chloroplast
           precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
           thaliana}; contains Pfam profile PF01553:
           Acyltransferase
          Length = 459

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 236 GRRAYGPPDGEWLPSPMDFSS 174
           GR    P  GEW P+P D SS
Sbjct: 324 GRDRPNPSTGEWFPAPFDASS 344


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,299,601
Number of Sequences: 28952
Number of extensions: 291461
Number of successful extensions: 652
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)