Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0340
         (626 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_49882| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_29865| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_35352| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)                27   9.4  
SB_14972| Best HMM Match : UPF0066 (HMM E-Value=5.7)                   27   9.4  

>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 377  EADYWEQMKAKYDPKDEFKEIY-EGFLAG 460
            +AD W  + A YD +D F +IY  G L G
Sbjct: 5963 DADEWYHVAATYDSRDRFAKIYINGELKG 5991


>SB_49882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 381 LITGSR*RPNMIPKMNSKKSTRDSS-LGQN*TCYKCLRW 494
           + TGS  R N+   +N  K+T DS  LG N  C+ CL W
Sbjct: 191 IYTGSNARINI--NINGYKNTVDSLYLGDNVWCHLCLTW 227


>SB_29865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 168 LSVYFSAIDKPATNKSAAIVRHFMSAMASNQHKSDVTQTL 49
           L V+ +A+ KPA   S  +  HF S  A N   ++ T  L
Sbjct: 214 LKVFGNAVVKPAITNSDVVENHFCSVRACNGQNNNPTWRL 253


>SB_35352| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)
          Length = 221

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 242 DEGRCTPDGKELKAHIKDGMQTACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYD-P 418
           D  +C+ DG+ +   +K   Q A  K +  +K   R++   +   E     + K K+D P
Sbjct: 95  DVAKCSQDGEGVVGPLKQLQQLAGGKASSTKKHQERQVAMVVNLSEVCNGVEAKPKHDSP 154

Query: 419 KD 424
            D
Sbjct: 155 MD 156


>SB_14972| Best HMM Match : UPF0066 (HMM E-Value=5.7)
          Length = 465

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -1

Query: 146 SISPPRIKVQQLLDTSCLQWPLINTKA 66
           + + PR +++Q + T CL+WP  NT+A
Sbjct: 165 NFTEPRQQIRQYIHT-CLEWPSRNTEA 190



 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -1

Query: 146 SISPPRIKVQQLLDTSCLQWPLINTKA 66
           + + PR +++Q + T CL+WP  NT+A
Sbjct: 271 NFTEPRQQIRQYIHT-CLEWPSRNTEA 296


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,099,574
Number of Sequences: 59808
Number of extensions: 378818
Number of successful extensions: 1029
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)