Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0340
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006681-5|AAK85491.1|  225|Caenorhabditis elegans Hypothetical ...    33   0.17 
Z49907-3|CAA90085.1|  225|Caenorhabditis elegans Hypothetical pr...    31   0.51 
Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z74035-3|CAA98481.1|  808|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CT...    28   4.8  
AF078790-2|AAC26940.1|  215|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U80954-5|AAB38096.1|  822|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AL032623-18|CAN99758.1|  330|Caenorhabditis elegans Hypothetical...    28   6.3  
Z68300-2|CAA92616.2|  440|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine rece...    27   8.3  
U01918-1|AAA85278.1|  359|Caenorhabditis elegans dpy-20 protein.       27   8.3  
AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical ...    27   8.3  

>AC006681-5|AAK85491.1|  225|Caenorhabditis elegans Hypothetical
           protein R13H9.1 protein.
          Length = 225

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
 Frame = +2

Query: 254 CTPDGKEL--KAHIKDGMQTACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKDE 427
           C+   KEL  KA  K+   TA      + K S   +    K+  A +++Q      P   
Sbjct: 102 CSKKFKELLDKALAKEPKDTALLHLRGRYKYSVASLTWLEKKLAATFYQQ-----PPSHS 156

Query: 428 FKEIYEGFLAGSKLNLL*MLAVVQQNNCFFFVRN----HKWLL-VCKFEPY 565
           ++E  E FLA  K+N   M      + C+  +++     K+L  VC  EPY
Sbjct: 157 YEEANEDFLAAYKVNPKWMENTFYVSKCYVAIKDKNNARKYLTEVCDIEPY 207


>Z49907-3|CAA90085.1|  225|Caenorhabditis elegans Hypothetical
           protein B0491.3 protein.
          Length = 225

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
 Frame = +2

Query: 254 CTPDGKEL--KAHIKDGMQTACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKDE 427
           C+   KEL  K   K+   TA      + K S   +    K+  A +++Q      P   
Sbjct: 102 CSKKFKELLDKTLAKEPKDTAVLHLRGRYKYSVASLTWLEKKLAATFYQQ-----PPSHS 156

Query: 428 FKEIYEGFLAGSKLNLL*MLAVVQQNNCFFFVRN----HKWLL-VCKFEPY 565
           ++E  E FLA  K+N   M      + C+  +++     K+L  VC  EPY
Sbjct: 157 YEEANEDFLAAYKVNPKWMENTFYVSKCYVAIKDKANARKYLTEVCDIEPY 207


>Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical
           protein F58G11.5 protein.
          Length = 675

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +3

Query: 288 SKTECRQRVRSVQINRRCQPERSLNTLSSTKLITGSR*RPNMIPKMNSKKSTRDSSLGQ 464
           S++  R   RS   +R   P R   + S++   +GS  R +   + +S +  RDS++GQ
Sbjct: 521 SRSPPRDHKRSRSPSRSPSPRRRQRSSSNSSRSSGSSSRSSSSSRKSSPERGRDSNIGQ 579


>Z74035-3|CAA98481.1|  808|Caenorhabditis elegans Hypothetical
           protein F47G9.4 protein.
          Length = 808

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +2

Query: 191 EILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAKCTDKQKVSARKIVKHIK 370
           +IL   K LVPY+ C+L+      D K         M++ C + T  +  S  +I+   K
Sbjct: 464 QILTAAKQLVPYVSCILNMNAMI-DPKRCHPPDPAPMESICLEITGIEPNSQNRILAIEK 522

Query: 371 QHE 379
           + E
Sbjct: 523 EEE 525


>AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CTD
           associated factor 6 protein.
          Length = 675

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +3

Query: 288 SKTECRQRVRSVQINRRCQPERSLNTLSSTKLITGSR*RPNMIPKMNSKKSTRDSSLGQ 464
           S++  R   RS   +R   P R   + S++   +GS  R +   + +S +  RDS++GQ
Sbjct: 521 SRSPPRDHKRSRSPSRSPSPRRRQRSSSNSSRSSGSSSRSSSSSRKSSPERGRDSNIGQ 579


>AF078790-2|AAC26940.1|  215|Caenorhabditis elegans Hypothetical
           protein F36H12.11 protein.
          Length = 215

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
 Frame = +2

Query: 245 EGRCTPDGKELKAHIKDGMQTACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKD 424
           E   T +  E     K+ +  A AK   K   S   +    K+  A +++Q      P  
Sbjct: 92  EYMATKEKLECSKKFKELLDKALAK-EPKDTYSVASLTWLEKKLAATFYQQ-----PPSH 145

Query: 425 EFKEIYEGFLAGSKLNLL*MLAVVQQNNCFFFVRN----HKWLL-VCKFEPY 565
            ++E  E FLA  K+N   M      + C+  +++     K+L  VC  EPY
Sbjct: 146 SYEEANEDFLAAYKVNPKWMENTFYVSKCYVAIKDKNNARKYLTEVCDIEPY 197


>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
            F54E4.1 protein.
          Length = 2948

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 275  LKAHIKDGMQTACAKCTDKQ 334
            L   +KD +QT C+KC D Q
Sbjct: 1727 LSGSLKDAVQTLCSKCNDVQ 1746


>U80954-5|AAB38096.1|  822|Caenorhabditis elegans Hypothetical
           protein T07F8.1 protein.
          Length = 822

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +2

Query: 221 PYIKCVLDEGRCTPDGKELKAHIKDGMQTACAKCTDKQKVSARKIVKHIKQ 373
           P+   ++  GR T D ++   H      TAC KC +K  +S  ++++H  +
Sbjct: 569 PFAIHMVCAGRYTEDQRQAAKH----HPTACLKCQEKHILSNEEMIEHANE 615


>U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical
           protein R04E5.2 protein.
          Length = 762

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 155 KYTDKYDNIDVDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHI 289
           K  DKY  +D+D +  NR  +V  +K  ++   C  D   LK  I
Sbjct: 288 KILDKYAGVDIDVV--NRSRMVEMLKMNMENDACDIDLSTLKIAI 330


>AL032623-18|CAN99758.1|  330|Caenorhabditis elegans Hypothetical
           protein Y43F8B.15 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 13/55 (23%)
 Frame = +2

Query: 320 CTDKQKVSARKIVK---HI-----KQHEADYWEQM----KAKYDPKDE-FKEIYE 445
           CTD QKV   +++    H      KQH  DYW+++       + P DE FK +Y+
Sbjct: 95  CTDSQKVLCNEVIITTFHALFDLKKQHPHDYWKRIILYHTNDFTPTDEQFKRLYK 149


>Z68300-2|CAA92616.2|  440|Caenorhabditis elegans Hypothetical
           protein T22B3.1 protein.
          Length = 440

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +2

Query: 185 VDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAKCTDK-QKVSARKIVK 361
           VD  +    +L+P +K     GR T +      H  D     C  CT   +   A  + K
Sbjct: 118 VDCSISPEPILMPSVK----RGRPTENPCWAYFHRIDDQLVKCRLCTKVVRSACATNMTK 173

Query: 362 HIKQHEADYWEQM 400
           H+++H AD ++++
Sbjct: 174 HLERHHADDYQKV 186


>U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine
           receptor, class sx protein22 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 375 CCLMCLTIFLADTFCLSVHFAHAVCIPS 292
           CC++ L + LA  F LS      VC P+
Sbjct: 129 CCILSLVVSLAKLFYLSEDIVLTVCYPT 156


>U01918-1|AAA85278.1|  359|Caenorhabditis elegans dpy-20 protein.
          Length = 359

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +2

Query: 185 VDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAKCTDK-QKVSARKIVK 361
           VD  +    +L+P +K     GR T +      H  D     C  CT   +   A  + K
Sbjct: 118 VDCSISPEPILMPSVK----RGRPTENPCWAYFHRIDDQLVKCRLCTKVVRSACATNMTK 173

Query: 362 HIKQHEADYWEQM 400
           H+++H AD ++++
Sbjct: 174 HLERHHADDYQKV 186


>AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical
           protein Y76B12C.2 protein.
          Length = 1119

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +2

Query: 257 TPDGKELKAHIKDG--MQTACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKY 412
           TP  K L+   K G   Q    K    +K +A+K+V   + +  +YW+  + ++
Sbjct: 684 TPGEKSLEIQEKSGEKSQKPAKKGQKSEKKAAKKVVVEERNYWVEYWQPREKRW 737


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,212,488
Number of Sequences: 27780
Number of extensions: 294351
Number of successful extensions: 815
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)