Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0340
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40410.1 68418.m04901 pentatricopeptide (PPR) repeat-containi...    33   0.21 
At3g24260.1 68416.m03047 hypothetical protein                          29   1.9  
At1g29600.1 68414.m03619 zinc finger (CCCH-type) family protein ...    29   3.3  
At5g55180.1 68418.m06879 glycosyl hydrolase family 17 protein si...    28   5.8  
At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) seve...    27   7.7  
At1g56440.1 68414.m06491 serine/threonine protein phosphatase-re...    27   7.7  

>At5g40410.1 68418.m04901 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1155

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
 Frame = +2

Query: 290 KDGMQTACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGF----LA 457
           +  M TACA+C D   V ARK+ + + + +   W  M + Y    E +E    F    L 
Sbjct: 177 RTAMVTACARCGD--VVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLE 234

Query: 458 GSKLNLL*MLAVV 496
           G K+N + M++V+
Sbjct: 235 GVKVNGVAMISVL 247


>At3g24260.1 68416.m03047 hypothetical protein
          Length = 374

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
 Frame = +2

Query: 164 DKYDNIDVDEILENRKLLVPYIKCVL----DEGRCTPDGKELKAHIKDGMQTACAKCTDK 331
           D  +  + + IL N   ++P I+ V     D  R   D  E K  + + ++    + T  
Sbjct: 53  DHDEKPEENPILLNEPKMIPRIRIVYKPKDDVERKMKDRLEAKQKLTELLKAIEERLTRS 112

Query: 332 QKVSARKIVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGFL 454
           +      + K  K H  DY + +K+     D++K +Y+ F+
Sbjct: 113 ELRVYTCLCKDFKSHRIDYSQFVKSLQRLIDKYKNLYQRFV 153


>At1g29600.1 68414.m03619 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 287

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +2

Query: 323 TDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGFLAGSKLNLL*MLAVVQ- 499
           T +Q+VS   + +   + E+  W++ + +     E + +++G    S   +L     V+ 
Sbjct: 73  TQQQRVSDVVMQRRSHETESRLWQRARTQDRRGSESRMMFDGRTQWSHAPVLSSAYPVRP 132

Query: 500 -QNNCFFFVRNH 532
            ++NC F+++NH
Sbjct: 133 GEDNCLFYMKNH 144


>At5g55180.1 68418.m06879 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 460

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +2

Query: 200 ENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAK 319
           +N++ +VP    ++ +  C  +GK  K  +++G+  AC +
Sbjct: 355 DNKEKVVPVKPSLVGQTWCVANGKTTKEKLQEGLDYACGE 394


>At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) several
           40S ribosomal protein S26
          Length = 130

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 269 KELKAHIKDGMQTACAKCTDKQKVSARKIVKHIKQHEA 382
           K  + H+K    + C KC  K K   R IV++I +  A
Sbjct: 12  KHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAA 49


>At1g56440.1 68414.m06491 serine/threonine protein
           phosphatase-related similar to SP|Q60676
           Serine/threonine protein phosphatase 5 (EC 3.1.3.16)
           (PP5) (Protein phosphatase T) (PPT) Mus musculus,
           Tetratricopeptide Repeats Of Protein Phosphatase 5 [Homo
           sapiens] GI:3212250; contains Pfam profile: PF00515: TPR
           Domain
          Length = 476

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 8/107 (7%)
 Frame = +2

Query: 173 DNIDVDEILENRKLLVPYIKCVLDEGRCTPDG----KELKAHIKDGMQTACAKCTDKQKV 340
           +NI  +E  +   + +P I  +LD  + TP      KE K   ++G Q +  +    +++
Sbjct: 266 ENIQPEEKSKEGSMKIPAITEILDSKKVTPGSQSYEKEAKPSDRNGTQPSGPENQVSKQL 325

Query: 341 SARKIVKHIKQHEAD--YWEQMKAKYDPKD--EFKEIYEGFLAGSKL 469
             +  V+ +  H A     E  K    PK   EF+  +  F   S L
Sbjct: 326 ELKPSVQELAAHAASLAMTEASKNIKTPKSAYEFENSWRSFSGDSAL 372


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,215,786
Number of Sequences: 28952
Number of extensions: 265959
Number of successful extensions: 691
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)