Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0339
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    26   3.9  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    26   5.1  
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    26   5.1  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   9.0  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   9.0  

>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 330 WIRTQQYYYENDPKRVYYL 386
           WI     YY+ DP+R+++L
Sbjct: 246 WIVENAIYYDADPERIFFL 264


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 415 FKIP*STLASKVLLTKHYTNLVWILK 492
           F +   T  +KV  ++ Y NL+W+ K
Sbjct: 148 FLVAGGTFVTKVFRSRDYNNLLWVFK 173


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 374 SLRIIFIIVLLSTNPPGDKMIFHRCVRE 291
           SL+++   V   T+P   K++  RCVRE
Sbjct: 112 SLQLLLSRVFCRTSPKAAKVLLTRCVRE 139


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +2

Query: 536  SWTLSSLFPRLYGDIRSCCVWIW 604
            SW + +   + +  I +CC+W W
Sbjct: 2054 SWIVRACIVQGFQQIWACCLWYW 2076


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 330 WIRTQQYYYENDPKRVYYLSLEYYMGRSLQNTMIN 434
           WI+ + YY +   + +  L L  Y GR  Q+  IN
Sbjct: 472 WIKVKPYYLQGFGEDLDCLILGGYFGRGKQSGKIN 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,653
Number of Sequences: 5004
Number of extensions: 50495
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)