Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0339
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44438| Best HMM Match : Phosphorylase (HMM E-Value=1e-22)          154   6e-38
SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)                       29   3.1  
SB_11170| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_54576| Best HMM Match : Nucleoplasmin (HMM E-Value=2.6)             27   9.4  

>SB_44438| Best HMM Match : Phosphorylase (HMM E-Value=1e-22)
          Length = 398

 Score =  154 bits (373), Expect = 6e-38
 Identities = 76/112 (67%), Positives = 79/112 (70%)
 Frame = +3

Query: 291 LSHTPVKDHLVSRWIRTQQYYYENDPKRVYYLSLEYYMGRSLQNTMINLGIQGTVDEALY 470
           L+HT VKDHLV +WIRTQQ YYE DPKRVYYLSLEYYMGR+L NTMINLGIQG  DEA Y
Sbjct: 91  LAHT-VKDHLVGKWIRTQQTYYEKDPKRVYYLSLEYYMGRALSNTMINLGIQGECDEAAY 149

Query: 471 QXXXXXXXXXXXXXXXXXXXXXXXRLAACFLDSMATLGLAAYGYGIRYEYGI 626
           Q                       RLAACFLDSMATLG  AYGYGIRYEYGI
Sbjct: 150 QLGLDMEELEEMEEDAGLGNGGLGRLAACFLDSMATLGYPAYGYGIRYEYGI 201



 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 30/49 (61%), Positives = 40/49 (81%)
 Frame = +1

Query: 142 TDAEKRKQISVRGIVAVENVTEVKKAFNRHVHYTLVKDRNVATPRGLLF 288
           TDAEK++QIS+R +  VE+V  +K+AFNRH+HY+LVKDRNVAT +   F
Sbjct: 41  TDAEKKRQISMRRLPVVEDVNGIKEAFNRHLHYSLVKDRNVATTQDYYF 89


>SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)
          Length = 2065

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 73  SCRISLVTSNSQLSFDPRAEFLQ 5
           +CR+ +VTSNS L  D R  FL+
Sbjct: 333 ACRVDMVTSNSPLLLDARDVFLE 355


>SB_11170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +3

Query: 213 EGVQSSCPLHFSERSKCCDPAGITILLSHTPVKDHLVSRWIRTQQYYY 356
           EG +   P+   E  K C+  G+  +  HT + D L+ +    Q  ++
Sbjct: 13  EGKEDEIPMLVDELGKACEQLGLFYITGHT-IGDELIEKLSDVQSKFF 59


>SB_54576| Best HMM Match : Nucleoplasmin (HMM E-Value=2.6)
          Length = 281

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 199 VTEVKKAFNRHVHYTLVKDRNVATPRGLLFCS 294
           +T+ + + N H  Y   ++  V TP GL+FCS
Sbjct: 22  ITQDQHSDNDHPCYETWENVTVPTPNGLVFCS 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,938,292
Number of Sequences: 59808
Number of extensions: 386536
Number of successful extensions: 965
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)