Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0339
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.4  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    21   9.8  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      21   9.8  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 402 YSTPRTNSRLS*DHFHNSIVEYES 331
           +S  RT ++L   +FH++ + YES
Sbjct: 26  FSFLRTRTKLQPTYFHHTYIIYES 49


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 402 YSTPRTNSRLS*DHFHNSIVEYES 331
           +S  RT ++L   +FH++ + YES
Sbjct: 26  FSFLRTRTKLQPTYFHHTYIIYES 49


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 359 FIIVLLSTNPPGDKMIFHRC 300
           +II +    PPG K I +RC
Sbjct: 53  YIIDVPPRCPPGSKFIKNRC 72


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 359 FIIVLLSTNPPGDKMIFHRC 300
           +II +    PPG K I +RC
Sbjct: 53  YIIDVPPRCPPGSKFIKNRC 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,807
Number of Sequences: 438
Number of extensions: 3620
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)