Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0339
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46970.1 68416.m05100 starch phosphorylase, putative similar ...    90   1e-18
At3g29320.1 68416.m03682 glucan phosphorylase, putative similar ...    88   4e-18
At5g45113.1 68418.m05537 mitochondrial transcription termination...    30   1.1  
At1g50750.1 68414.m05707 expressed protein                             27   7.7  

>At3g46970.1 68416.m05100 starch phosphorylase, putative similar to
           alpha-glucan phosphorylase, H isozyme SP:P32811 from
           [Solanum tuberosum]
          Length = 841

 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 43/107 (40%), Positives = 60/107 (56%)
 Frame = +3

Query: 306 VKDHLVSRWIRTQQYYYENDPKRVYYLSLEYYMGRSLQNTMINLGIQGTVDEALYQXXXX 485
           ++D L+  W  T  ++ + DPK+ YYLS+EY  GR+L N + NL +QG   +AL      
Sbjct: 62  LRDRLIQLWNETYVHFNKVDPKQTYYLSMEYLQGRALTNAIGNLNLQGPYADALRTLGYE 121

Query: 486 XXXXXXXXXXXXXXXXXXXRLAACFLDSMATLGLAAYGYGIRYEYGI 626
                              RLA+CFLDSMATL L A+GYG+RY +G+
Sbjct: 122 LEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRHGL 168


>At3g29320.1 68416.m03682 glucan phosphorylase, putative similar to
           alpha-glucan phosphorylase, L isozyme 1 precursor
           GB:P04045 from [Solanum tuberosum] (J. Biochem. 106 (4),
           691-695 (1989))
          Length = 962

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 42/107 (39%), Positives = 59/107 (55%)
 Frame = +3

Query: 306 VKDHLVSRWIRTQQYYYENDPKRVYYLSLEYYMGRSLQNTMINLGIQGTVDEALYQXXXX 485
           V+D L+  W  T +YY   + K+ YYLS+E+  GR+L N + NLG+     +AL +    
Sbjct: 128 VRDALIMNWNATYEYYNRVNVKQAYYLSMEFLQGRALSNAVGNLGLNSAYGDALKRLGFD 187

Query: 486 XXXXXXXXXXXXXXXXXXXRLAACFLDSMATLGLAAYGYGIRYEYGI 626
                              RLA+CFLDSMATL   A+GYG+RY+YG+
Sbjct: 188 LESVASQEPDPALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGL 234


>At5g45113.1 68418.m05537 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 414

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -2

Query: 464 CFVNSTLDAKVDHGILKRTPHIVLQGQIVDSLRIIFII 351
           CFV + LD  V   ++KR PHI+ + + +   +II +I
Sbjct: 297 CFVKAGLDYNVVSQLVKRAPHILNRPKDIIEKKIIMLI 334


>At1g50750.1 68414.m05707 expressed protein
          Length = 816

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -2

Query: 428 HGILKRTPHIVLQGQIVDSLRIIFIIVLLSTNPPGDKMIFHRCVR 294
           HG+L+RT       QI+DSL+I  + +  S N   + + F RC++
Sbjct: 248 HGLLQRTSDA---RQILDSLKIDTVWIPASPNLDVEFVSFARCIK 289


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,062,314
Number of Sequences: 28952
Number of extensions: 258687
Number of successful extensions: 599
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)