Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0338
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    28   0.80 
SPAC2C4.09 |||DUF1640 family protein|Schizosaccharomyces pombe|c...    25   5.6  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   5.6  
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    25   7.4  
SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces...    25   7.4  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.4  

>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 27.9 bits (59), Expect = 0.80
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 219 LNGCSVKVSITPVPVSDPAPH*SRSVIDPAALHFIYCITNETQS 88
           L+   VKVS + + V D  PH S++V D     +   +T E QS
Sbjct: 33  LDFVKVKVSSSDIVVKDSIPHKSKNVFDDFDDGYAIDLTEEHQS 76


>SPAC2C4.09 |||DUF1640 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 216

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 119 KCRAAGSMTERLQWGAGSLTGTGVIL 196
           + + A   T+ LQW  G +TG+G +L
Sbjct: 183 RTQLASFKTQTLQWVFGIVTGSGALL 208


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 405 GGRAHSPSGVKWLLEP 452
           GG  H P+ V WLL P
Sbjct: 235 GGPLHDPNTVMWLLRP 250


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 258 KRLPSVYRPSINAYKVPNIEISTVRLHVLGVDLYACVLARARFIFI 395
           K  P  +   ++  + PNI ++ +  HV+  DLY+  L  A ++ +
Sbjct: 181 KNFPEGFEDFVSFLENPNIPLTVLLHHVMLYDLYSNNLKDAVWVAV 226


>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 382

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 303 VPNIEISTVRLHVLGVDLYACVLARARFIFIV*MGGRAHSP 425
           +PN+ IS  R+H + +DL   +   A F  I    G   +P
Sbjct: 218 IPNLRISGARIHSITIDLPIKLNGNAVFSEITYKDGTIAAP 258


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 151  ASVGRGVTDRYRSYTHFDGTSIQQILIKVNLR 246
            AS+G  ++   +S THFD T    ++   +LR
Sbjct: 1989 ASLGMKLSFFTKSITHFDATDANSVMFANSLR 2020


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,967,576
Number of Sequences: 5004
Number of extensions: 38859
Number of successful extensions: 73
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)