Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0338
         (462 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)                 29   1.9  
SB_50031| Best HMM Match : SOCS_box (HMM E-Value=2.7)                  29   1.9  
SB_58468| Best HMM Match : rve (HMM E-Value=1.2e-11)                   27   5.7  

>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
          Length = 1604

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 317  NIDSSITCIRCRPVCMCLSAGTFYFYCIDGWTSSQP 424
            N+  S+T  +  P C C + GT+Y  C  G    QP
Sbjct: 1015 NVSESVTHQKAGPGCRCSANGTWYL-CDQGAAGKQP 1049


>SB_50031| Best HMM Match : SOCS_box (HMM E-Value=2.7)
          Length = 256

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 317 NIDSSITCIRCRPVCMCLSAGTFYFYCIDGWTSSQP 424
           N+  S+T  +  P C C + GT+Y  C  G    QP
Sbjct: 188 NVSESVTHQKAGPGCRCSANGTWYL-CDQGAAGKQP 222


>SB_58468| Best HMM Match : rve (HMM E-Value=1.2e-11)
          Length = 257

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 400 YTIKIKRARAKTHAYRSTPNTCNRTVDISMFGTLYA 293
           + ++I+R+ AK H  +S     NRT+   ++   YA
Sbjct: 79  HNVRIQRSEAKNHKAQSVVERVNRTLSERLYSHQYA 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,014,493
Number of Sequences: 59808
Number of extensions: 307819
Number of successful extensions: 500
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)