Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0338
         (462 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   0.92 
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    24   0.92 
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    24   0.92 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   3.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   4.9  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   6.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.5  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   8.5  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           21   8.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.5  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   8.5  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 0.92
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 167 GSLTGTGVILTLTEHPFNKY*LK*IYGLTVKALTV 271
           GSL G G I T+T   F++Y +  + GL+ K L++
Sbjct: 132 GSLFGCGSIWTMTMIAFDRYNVI-VKGLSGKPLSI 165


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.8 bits (49), Expect = 0.92
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 167 GSLTGTGVILTLTEHPFNKY*LK*IYGLTVKALTV 271
           GSL G G I T+T   F++Y +  + GL+ K L++
Sbjct: 98  GSLFGCGSIWTMTMIAFDRYNVI-VKGLSGKPLSI 131


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.8 bits (49), Expect = 0.92
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 167 GSLTGTGVILTLTEHPFNKY*LK*IYGLTVKALTV 271
           GSL G G I T+T   F++Y +  + GL+ K L++
Sbjct: 8   GSLFGCGSIWTMTMIAFDRYNVI-VKGLSGKPLSI 41


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 130 RGVNDRAASVGRGVTDRYRSYTH 198
           +G+N R AS+  G+    RS+ H
Sbjct: 227 KGINGRRASLFCGLQKYTRSFAH 249


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 116 IKCRAAGSMTERLQW 160
           +KC AAG+ T ++ W
Sbjct: 441 LKCSAAGNPTPQVTW 455



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 5/9 (55%), Positives = 9/9 (100%)
 Frame = +3

Query: 435 KWLLEPTDI 461
           +W++EPTD+
Sbjct: 711 RWIVEPTDV 719


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 116 IKCRAAGSMTERLQW 160
           +KC AAG+ T ++ W
Sbjct: 441 LKCSAAGNPTPQVTW 455



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 5/9 (55%), Positives = 9/9 (100%)
 Frame = +3

Query: 435 KWLLEPTDI 461
           +W++EPTD+
Sbjct: 707 RWIVEPTDV 715


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 130 RGVNDRAASVGRGVTDRYRSYTH 198
           +G+N R AS+  G+    RS+ H
Sbjct: 222 KGINGRRASLFCGLQKYTRSFAH 244


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 116 IKCRAAGSMTERLQW 160
           I+C  AG    R+QW
Sbjct: 421 IRCHVAGEPLPRVQW 435


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 32  YKGNKKKKICLHISVIVRGDWVSLVIQ*IKCRAAGSMTER 151
           Y+   K+ IC    +I R  WV+   Q   C  + S  ER
Sbjct: 335 YRNAFKQTICCKTRIIGRRSWVTRESQ--ICNNSSSDKER 372


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +3

Query: 435 KWLLEPTD 458
           +W+LEPTD
Sbjct: 680 RWILEPTD 687


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 155 QWGAGSLTGTGVILTLTEHPFN 220
           QW +   +GT  + T T HP++
Sbjct: 448 QWKSILESGTTTLQTRTMHPYD 469


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 314 RNIDSSITCIRCRP 355
           RN+   I C+R RP
Sbjct: 264 RNVKEMIRCLRYRP 277


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 314 RNIDSSITCIRCRP 355
           RN+   I C+R RP
Sbjct: 135 RNVKEMIRCLRYRP 148


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 350 RPVCMCLSAGTFYFYCIDGWTS 415
           R V  C + G F +   DGW++
Sbjct: 359 RAVKRCNATGAFSWIGSDGWSA 380


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 314 RNIDSSITCIRCRP 355
           RN+   I C+R RP
Sbjct: 264 RNVKEMIRCLRYRP 277


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,329
Number of Sequences: 438
Number of extensions: 3252
Number of successful extensions: 17
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)