Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0337
         (432 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   3.8  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   3.8  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   6.6  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 230 MRRPWLNLA*PLTQQRLTVQHQLD 301
           ++ P LNL  P+TQ +L +   LD
Sbjct: 191 LQNPGLNLNPPVTQTQLPLNLGLD 214


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
 Frame = +1

Query: 142 LELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAEFGL---TSNTAKA--HCPAPI 297
           L+ +  IEG ++VP   + ++N  +    D  +L   GL   ++NT ++  H  +PI
Sbjct: 39  LKEQPKIEGKVQVPEALKKIYNIQNNFEYDTASLPLPGLYTKSANTIRSFTHVESPI 95


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 159 D*RYPKGTSSKSNAV 203
           D  YPKG+  K N V
Sbjct: 209 DWEYPKGSEDKKNYV 223


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,253
Number of Sequences: 336
Number of extensions: 2127
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9565283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)