Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0337
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    32   0.033
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    30   0.17 
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    27   0.93 
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    27   1.2  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    25   3.8  
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    25   5.0  
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    25   6.6  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    24   8.7  

>SPBC685.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 97

 Score = 32.3 bits (70), Expect = 0.033
 Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
 Frame = +1

Query: 76  VFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQM---LFNKDSQLMEDEKTLA 246
           V +  +R+KLTV  + +   +V +  K+++  L +PP S +    F ++  +  +   L+
Sbjct: 2   VLVKFKREKLTVMLEVQPGLSVYDAVKLLKSALNLPPDSILRIGSFEQNDWVAMENDALS 61

Query: 247 EFGLTSNTAKAHCPAPIGLALRK 315
           +  +T+NT  A       L + K
Sbjct: 62  KTIITNNTEYAFAEGEEPLLVEK 84


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 29.9 bits (64), Expect = 0.17
 Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +1

Query: 202 FNKDSQLMEDEKTLAEFGLTSNTAKAHCPAPIGLALRKENGEFEALELT-PYSSPPDLPD 378
           F+  ++ +  ++ + +  +TSN       +     L  +N E   + LT P ++ P L +
Sbjct: 347 FSPIARPLTSQEAIVDMDITSNNINLSPVSHFSNGLDLQNLEEAPMNLTRPINANPHLTN 406

Query: 379 VMKSQETNGQEQMD 420
              +  TNG+E+MD
Sbjct: 407 HSPNDLTNGEEEMD 420


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
 Frame = +1

Query: 52  RGQNNIMDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMED 231
           + +N  MDV    + K+L   T    T TVL+ + +    + + P      NK  QL+  
Sbjct: 112 KNENFRMDVLETYKCKQLNHQTTHLPTNTVLKKRSLFNDAISIVP------NKKKQLVSA 165

Query: 232 EKTLAEF-GLTSN---TAKAHCPAPIGLALRK 315
             T ++  G +SN   T K    +P G  LRK
Sbjct: 166 ISTNSDSQGASSNIIPTPKYDSNSPAGHELRK 197


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 396 LLRFHNIWQVGG*RIRGKFQCLKFTILLPQS*SNWC 289
           LL+  N+ ++GG  + GK +   FT+  P+   +WC
Sbjct: 39  LLQLKNL-KLGGSEVSGKKKDTSFTLKTPKGTKDWC 73


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 355 NTG*VPVPQIHHSPSSKLIQLVLDSEPLLC*RSGQIQPRSS 233
           N G  PV ++  S  ++++ L   S+P+L  R G +  R S
Sbjct: 141 NVGRYPVSKLSCSTKNQILALYTHSQPILYDRDGSLIVRFS 181


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 229 DEKTLAEF-GLTSNTAKAHCPAPIGL 303
           + K L E+   TSNT K H P PI +
Sbjct: 127 ETKILQEYITQTSNTVKKHAPPPIAM 152


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 190 SQMLFNKDSQLMEDEKTLAEFGLTSNTAKAHCPAPIG 300
           +Q +   DS   +DE+T  E   T+N +   CP   G
Sbjct: 420 TQEVEENDSDSHDDEETWCEVCETNNHSLQECPTVFG 456


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 145 ELKKMIEGILKVPPPSQMLFNKD 213
           E  +++EG L  P P ++LF+ D
Sbjct: 29  EEAELLEGALHAPYPEELLFDDD 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,833,297
Number of Sequences: 5004
Number of extensions: 35456
Number of successful extensions: 93
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)