Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0337
         (432 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032627-13|CAA21548.1|  118|Caenorhabditis elegans Hypothetical...    75   2e-14
AF326942-1|AAG49392.1|  118|Caenorhabditis elegans RNA polymeras...    75   2e-14
Z78420-1|CAB01708.1|   77|Caenorhabditis elegans Hypothetical pr...    30   0.62 
Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical pr...    29   1.4  
U53155-4|AAC48265.1|  619|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AL132948-31|CAD31831.2|  191|Caenorhabditis elegans Hypothetical...    27   7.7  

>AL032627-13|CAA21548.1|  118|Caenorhabditis elegans Hypothetical
           protein Y41C4A.10 protein.
          Length = 118

 Score = 75.4 bits (177), Expect = 2e-14
 Identities = 42/113 (37%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
 Frame = +1

Query: 73  DVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKD-----SQLMEDEK 237
           ++F  +RR +  ++ DA+E+ +V+ELK M+ GI + P     L+  D     SQL+ D  
Sbjct: 5   ELFFEVRRNRSHIYLDAEESHSVMELKLMLAGITRDPVNHMELWKLDEDGNKSQLLHDTA 64

Query: 238 TLAEFGLTSNTAKAHCPAPIGLALRKENGEFEALELTPYSSPPDLPDVMKSQE 396
           TL++ G +S  AKA CPA +G  LR  N E E L ++  S+ P +PD M+ ++
Sbjct: 65  TLSDAGFSSTNAKAQCPAALG--LRLTNAE-EHLTISDVSTAPPIPDTMRQEQ 114


>AF326942-1|AAG49392.1|  118|Caenorhabditis elegans RNA polymerase
           II transcriptionfactor SIII p18 subunit protein.
          Length = 118

 Score = 75.4 bits (177), Expect = 2e-14
 Identities = 42/113 (37%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
 Frame = +1

Query: 73  DVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKD-----SQLMEDEK 237
           ++F  +RR +  ++ DA+E+ +V+ELK M+ GI + P     L+  D     SQL+ D  
Sbjct: 5   ELFFEVRRNRSHIYLDAEESHSVMELKLMLAGITRDPVNHMELWKLDEDGNKSQLLHDTA 64

Query: 238 TLAEFGLTSNTAKAHCPAPIGLALRKENGEFEALELTPYSSPPDLPDVMKSQE 396
           TL++ G +S  AKA CPA +G  LR  N E E L ++  S+ P +PD M+ ++
Sbjct: 65  TLSDAGFSSTNAKAQCPAALG--LRLTNAE-EHLTISDVSTAPPIPDTMRQEQ 114


>Z78420-1|CAB01708.1|   77|Caenorhabditis elegans Hypothetical
           protein F45H11.2 protein.
          Length = 77

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +1

Query: 82  LMIRRKKLT---VFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAEF 252
           ++I+ K LT   +  D +    V  +K+ +E    +PPP Q L     Q M D+KT A++
Sbjct: 1   MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQ-MNDDKTAADY 59


>Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical protein
            R11A8.6 protein.
          Length = 1141

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
 Frame = +1

Query: 139  VLELKKMI---EGI-LKVPPPSQMLFNKDSQLMEDEKTLAEFGLTS-NTAK---AHCPAP 294
            V++L +++   EG+ +K P    ++ N+DSQ +ED K+L  + L   N  K   +     
Sbjct: 821  VIDLVRLVRDREGLAVKYPLKEMIVINRDSQFLEDVKSLESYILLELNVRKLTVSQDKQK 880

Query: 295  IGLALRKENGEFEALELTPYSSPPDLPDVMKSQETNGQ 408
             G+ L+ E   F+ L          + D +K+Q T  +
Sbjct: 881  YGITLKAE-PNFKILGARLKGEQKKVADYLKNQITESE 917


>U53155-4|AAC48265.1|  619|Caenorhabditis elegans Hypothetical
           protein ZC513.3 protein.
          Length = 619

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = +1

Query: 82  LMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQL-MEDEKTLAEFG- 255
           LMI +K+ T+  D K    +  L    +G LK+  PS+++ N+  ++ M D  +   F  
Sbjct: 49  LMISKKQNTISADKKTAYEMRTLGGQHKGFLKIDLPSEIMNNQAHKVGMPDRYSTTLFAP 108

Query: 256 -LTSNTAKAH 282
            +  N A+ H
Sbjct: 109 PVPENKAQIH 118


>AL132948-31|CAD31831.2|  191|Caenorhabditis elegans Hypothetical
           protein Y39B6A.40 protein.
          Length = 191

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 70  MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILK 177
           MDVF + ++  L V +++  +   LE    IEG++K
Sbjct: 1   MDVFELTKKTLLAVISESSSSDDYLEALAEIEGLVK 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,244,963
Number of Sequences: 27780
Number of extensions: 201053
Number of successful extensions: 505
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)