Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0335
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    31   0.15 
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    29   0.62 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.1  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    27   1.9  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    26   3.3  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    26   4.4  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    26   4.4  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   5.8  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.8  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    25   7.6  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    25   7.6  
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha...    25   7.6  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    25   7.6  

>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +1

Query: 58  DKQY*VVMEKEHQPDSMATITMKPEYPPSEVYSTSEPPPAY 180
           +K+  VV EK   P  + T     E  PSE Y+  EPPP Y
Sbjct: 262 NKEVNVVEEKLRPPVRLLTEEELNELLPSEGYAILEPPPGY 302


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +2

Query: 374 DALVADEPLPLANAHALHGVPAMLSSVLPETSQPSSSRPSLFKDDALNHAESKINEDKLQ 553
           D  V+DE   L   +A + +   L   + E  +P   + S FK+    H ++KI +++L 
Sbjct: 801 DTFVSDELNSLCATNAYNRISTFLRMQIDEECKPCQFKKSNFKE----HFQNKIYQEQLD 856

Query: 554 KI 559
           K+
Sbjct: 857 KL 858


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 97  PDSMATITMKPEYPPSEVYSTSEPPP 174
           P   +T  + P  PP+   STS PPP
Sbjct: 293 PTGNSTTPVTPTVPPTSTSSTSTPPP 318



 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 97  PDSMATITMKPEYPPSEVYSTSEPPP 174
           P   +T  + P  PP+   STS PPP
Sbjct: 347 PTGNSTTPVTPTVPPTSTSSTSTPPP 372


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 85  KEHQPDSMATITMKPEYPPSEVYSTS 162
           + +  DS +TI  +PEYPP   +++S
Sbjct: 306 RRNSHDSNSTIICEPEYPPDTSFNSS 331


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +1

Query: 130 EYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILGTFILASSWVAARS 297
           E+    + + S  PP  + + STSV  A   A+ +V S+  LG+    +S  A ++
Sbjct: 215 EHADRSIKTHSSAPPLNQQKSSTSVNDAVSKAIQLVKSTSDLGSLSTNTSSTAQKN 270


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 164 SDVLYTSEGGYSGFIVIVAIESGWCSFSIT 75
           S V    +G Y+GFIV++A+ S    F ++
Sbjct: 211 SSVNSVGDGTYAGFIVLMAVGSALALFMVS 240


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 495 RLGREDDGWLVSGNTEDSMAGTPCKAWAFASGKGSSAT 382
           RL ++ D WL+SG        +  K W F    GSSAT
Sbjct: 222 RLSQKQDLWLLSGFALQHRTLSSTKGW-FNGFAGSSAT 258


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 144 RRRIFRLHSYCSHRVWLVFFFHHDLILFIKIYL 46
           RRRIFR H      +W+  FF   L++  +IY+
Sbjct: 32  RRRIFRPHFSQFWTIWMK-FFSIALVIITQIYV 63


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 94  QPDSMATITMKPEYPPSEVYSTSEPP 171
           QP + +T+   P  PPS  Y+T++PP
Sbjct: 86  QPGNASTMYASP--PPSSNYNTAKPP 109


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 444 CLQCYLRRASRHLHDPVSSKTTHS 515
           C QCYL    +++H+ + +K+T +
Sbjct: 292 CYQCYLISVGQNVHEYLRAKSTET 315


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
 Frame = +2

Query: 323 DAMLDKELALEGRAYGNDALVADEPLPLANAHALHG--------VPAMLSSVLPETSQPS 478
           D  LD+   +      +D+L++D P  + + +A           V A +S + P    PS
Sbjct: 43  DTPLDESAIVSEEESDDDSLLSDLPEEIDSTNAQSNIATPSPGTVAAAISGIQPPPKTPS 102

Query: 479 SSRPSL 496
           S  PSL
Sbjct: 103 SDSPSL 108


>SPCC16C4.08c |skb15||Shk1 kinase binding protein
           15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 85  KEHQPDSMATITMKPEYPPSEVYSTSEPPPAYR 183
           K    DS  + T       SE YSTS+ PP  R
Sbjct: 305 KRQSLDSETSETSSESESESEYYSTSKQPPVKR 337


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 124 KPEYPPSEVYSTSEPPPAYRHRVS 195
           K  Y P++  +T + PP Y H VS
Sbjct: 201 KGRYYPNKALATDKDPPLYLHIVS 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,412,164
Number of Sequences: 5004
Number of extensions: 48261
Number of successful extensions: 166
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)