Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0335
(561 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0362 - 16953108-16953155,16953478-16953562,16953626-169537... 29 1.9
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218... 29 2.5
09_04_0681 + 19416207-19416515,19416537-19416756,19416848-19417455 29 3.4
12_02_1197 + 26915933-26916298 28 4.4
02_05_1006 + 33448476-33448915,33449016-33449083,33449681-334497... 28 4.4
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689... 28 5.9
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665... 28 5.9
06_03_0968 - 26402154-26403834,26404322-26404383,26404473-264046... 27 7.7
03_03_0022 - 13834090-13834128,13835217-13835282,13835364-138354... 27 7.7
02_01_0051 - 385738-385968,386439-386864 27 7.7
>09_04_0362 -
16953108-16953155,16953478-16953562,16953626-16953702,
16954601-16954641,16955140-16955644,16955897-16956316
Length = 391
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +3
Query: 174 GLSAQGVNFGPDREDCSTNSGRFLLHLGNLYIGFELGSSSFIMPSARAAWMQCSTKNSLW 353
G +A G +FG S + L H G+ + G + S + + +AR AW Q LW
Sbjct: 310 GATASGSSFGGTSLLGSMHRDGQLQHHGD-WCGIDASYSRYHLTNARCAWAQSQIVEQLW 368
>05_01_0281 +
2186500-2187435,2187518-2187616,2187707-2187772,
2187850-2188266
Length = 505
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 121 MKPEYPPSEVYSTSEPPPAYRHRVSTSVQ 207
M P PP +++ PPP + H +T+V+
Sbjct: 457 MFPAAPPMSMFAPPPPPPPFPHAAATAVE 485
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 91 HQPDSMA-TITMKPEYPPSEVYSTSEPPPAYRHRVSTS 201
H+ D+ A T T+ PPSE + PPPA +TS
Sbjct: 244 HRLDTAAATATVAQRLPPSEARAPDAPPPAATATATTS 281
>09_04_0681 + 19416207-19416515,19416537-19416756,19416848-19417455
Length = 378
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 401 PLANAHALHGVPAM-LSSVLPETSQPSSSRPSLFKDD 508
P A A H PA+ + SV+P + P S RP K+D
Sbjct: 333 PFAGAAGFHAPPAVSVRSVIPVCAAPPSPRPPPRKED 369
>12_02_1197 + 26915933-26916298
Length = 121
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 170 GGSDVLYTSEGGYSGFIVIVAIESGW 93
GG DVL + GG +++VA ES W
Sbjct: 3 GGEDVLVVAPGGGRDALLLVAQESAW 28
>02_05_1006 +
33448476-33448915,33449016-33449083,33449681-33449751,
33449905-33450156,33450473-33450636,33450731-33450773,
33451044-33451161,33451384-33451481,33451550-33451594
Length = 432
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -1
Query: 114 CSHRVWLVFFFHHDL-ILFIKIYLLLVS 34
C H+ WL + HH++ ILF+K L L++
Sbjct: 403 CFHKSWLRYNAHHNIQILFVKHNLRLIT 430
>09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,
6899245-6899386,6899951-6900020,6900077-6900216,
6900291-6900365,6901083-6904723
Length = 1448
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/23 (47%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = -1
Query: 156 AVYF-RRRIFRLHSYCSHRVWLV 91
AV+F R++ RLH +CSH V+++
Sbjct: 1233 AVHFPNRKMRRLHEFCSHSVFVI 1255
>07_01_1203 -
11464142-11464324,11464422-11464484,11464685-11466515,
11467240-11468036
Length = 957
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +3
Query: 213 EDCSTNSGRFLLHLGNL 263
EDC G FL HLGNL
Sbjct: 574 EDCDITGGYFLKHLGNL 590
>06_03_0968 -
26402154-26403834,26404322-26404383,26404473-26404682,
26404776-26404860,26405461-26405618,26405745-26405868,
26405955-26406123,26406202-26406287,26406379-26406467,
26406564-26406735,26407820-26408193
Length = 1069
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 441 CCLQCYLRRASRHLHDPVSSKTTHSTMPS 527
C LQC+++RAS +H P + K S +P+
Sbjct: 252 CELQCHIQRASESMH-PFAPKNILSHLPN 279
>03_03_0022 -
13834090-13834128,13835217-13835282,13835364-13835461,
13836340-13836493,13836742-13836798,13836906-13837028
Length = 178
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 462 RRASRHLHDPVSSKTTHSTMPSP 530
RR + LHD SS ++HS++P P
Sbjct: 9 RRWAVELHDASSSSSSHSSIPDP 31
>02_01_0051 - 385738-385968,386439-386864
Length = 218
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +1
Query: 94 QPDSMATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILG 258
QP + A PE PP + PPPA + + ++A A + + F+ G
Sbjct: 82 QPAAAAAAAEDPEKPPVQEADPPPPPPALVYS-AAGTKLAGAAECAICLAEFVDG 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,145,338
Number of Sequences: 37544
Number of extensions: 375674
Number of successful extensions: 1274
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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