Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0335
         (561 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30684| Best HMM Match : 7tm_1 (HMM E-Value=9.3e-11)                 29   2.0  
SB_48526| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_41477| Best HMM Match : GspL (HMM E-Value=0.15)                     28   6.0  
SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)                   28   6.0  
SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)                   28   6.0  
SB_38342| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_35292| Best HMM Match : AFG1_ATPase (HMM E-Value=6.8)               27   7.9  

>SB_30684| Best HMM Match : 7tm_1 (HMM E-Value=9.3e-11)
          Length = 540

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = +1

Query: 115 ITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILGTFILASSWVAAR 294
           I+ K   P  E  STS     YR+RV  ++++AK  A  V+   F L T    ++W+  +
Sbjct: 360 ISSKNRIPVDETSSTSRGGVGYRNRVE-NIKVAKTVAAIVL--MFALCTAPFQTAWIMLQ 416

Query: 295 SSCHQLEQRGCNA 333
               +   R  +A
Sbjct: 417 FGDRETRIRAVSA 429


>SB_48526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 97  PDSMATITMKPEYPPSEVYSTSEPPPAYRHRVS 195
           PD  AT  + PEY   +     +PPP Y   ++
Sbjct: 28  PDMPATFQIPPEYTVEDPIKIDQPPPPYMDTIT 60


>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 85  KEHQPDSMATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQ 207
           + H P S  + T +P  PP    +T++ PPAY  R S ++Q
Sbjct: 91  RPHTPPSCQSNTPRPLTPPPRQSNTTQ-PPAYPPRQSYALQ 130


>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +1

Query: 127 PEYPPSEVYSTSEPPPAYRHRVSTSVQIAKI---AALTVVASSFILGTFILASS 279
           P  PP       +PPPA  H +   + I  +     + ++   FI G+F L+SS
Sbjct: 92  PAPPPPPAQPAPQPPPAPPHFLPFIIIITTVIITIVINIIIIRFISGSFRLSSS 145


>SB_41477| Best HMM Match : GspL (HMM E-Value=0.15)
          Length = 501

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = -2

Query: 422 KRGHLLVAKAHPLPGHHFRRLCLPKRVLCRALHPRCSS*WHDERAATQLEANIKVPKM 249
           ++G   + K  PL   H  R C+   V+    H +    W D   + Q EA   + +M
Sbjct: 117 QKGKAALGKLKPLEELHNERCCVDNCVMIVLTHLKLIQNWRDRATSGQTEARRVLAEM 174


>SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)
          Length = 1287

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 303 PSARAAWMQCSTKNSLWK 356
           P AR  W QC  KN+ W+
Sbjct: 560 PKARMFWAQCCQKNACWR 577


>SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)
          Length = 1029

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +1

Query: 73  VVMEKEHQPDSMATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQIA 213
           V++  +  P    +I  +PE P + ++S   PP     +V++S Q +
Sbjct: 514 VMLSTQQMPSPNTSIKQEPESPNTCIFSQQPPPQPAIKKVASSPQFS 560


>SB_38342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 127 PEYPPSEVYSTSEPPPAY 180
           P++PP + Y T +PP  Y
Sbjct: 29  PQHPPQQFYPTQQPPAQY 46


>SB_35292| Best HMM Match : AFG1_ATPase (HMM E-Value=6.8)
          Length = 305

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
 Frame = +2

Query: 320 VDAMLDKELALEGRAYGNDALVADEPLPLANAHAL----HGVPAM--LSSVLPETSQPSS 481
           +D  L+ + A  G A     L  DEP+ L + H+L    +GV A   L+S +  +     
Sbjct: 157 IDRTLEDQSADAGFAGLTRMLSCDEPMDLFSEHSLVNVVNGVKAKGPLASYVALSMTTIG 216

Query: 482 SRPSLFKDDALNHAESKINE 541
           + P LF  + L +    INE
Sbjct: 217 ASPDLFVTEGLEYLGVLINE 236


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,865,925
Number of Sequences: 59808
Number of extensions: 386810
Number of successful extensions: 1204
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)