Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0332
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    28   0.93 
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    27   1.6  
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    25   6.6  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    25   6.6  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   6.6  

>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 27.9 bits (59), Expect = 0.93
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
 Frame = +3

Query: 147 GVCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLRPIQGQPRCSERTE--GIS 320
           G+    CL   GC G G  +L+ +  R    +   A     R +  +    E  E  G+ 
Sbjct: 292 GIYGAGCLITEGCRGEGGYLLNSKGERFMERYAPTAKDLASRDVVSRAMTVEIREGRGVG 351

Query: 321 LTVFETFLPLS--PVGLLLQQLP 383
                 +L LS  P  +L ++LP
Sbjct: 352 PEKDHCYLQLSHLPAEILKERLP 374


>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 161 SLPVWLWVCWPRKTHAIRTSTKDA 232
           ++P+ LW+C P  T  + TST+DA
Sbjct: 94  NVPITLWICAP-LTAILSTSTRDA 116


>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 298 ANELKALASLYLKRSY-HYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTK 474
           A +  ALAS  ++  + + L S S FN Y    +       +L++   E  + ++KHV K
Sbjct: 630 AEDQNALASSNIETEFLNALESVSEFNEYGPVLKSSPSPI-ELTEQETEFVVKVVKHVFK 688

Query: 475 RGGKMDFSSHTT 510
               + F  H T
Sbjct: 689 DHLVVQFQLHNT 700


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 107 KNNKCVSPYVESTAFTHTGAEGDFQPS 27
           ++  C   YV   AFTH G   D  PS
Sbjct: 733 QHENCRIAYVAQAAFTHLGHHPDKTPS 759


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 120 H*INRIKYEGVCSHRCL 170
           H I+R++ +GVC  RCL
Sbjct: 446 HAISRVEAQGVCVDRCL 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,130,124
Number of Sequences: 5004
Number of extensions: 42679
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)