Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0331
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0254 + 16910070-16910173,16910266-16910410                       31   0.98 
06_01_0478 + 3407882-3407999,3408119-3408278,3408377-3408448,340...    29   3.0  
05_07_0059 + 27402365-27402733,27402848-27402982,27403070-274031...    28   5.2  
02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82...    28   5.2  
03_05_0555 + 25555081-25555432,25555488-25555699                       28   6.9  
01_06_0092 - 26377011-26377613,26379581-26380168                       27   9.2  

>02_03_0254 + 16910070-16910173,16910266-16910410
          Length = 82

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 453 SGWKIIQSVRQRKERGCSNI--SDSGITRNWCRT 548
           +GW +  +VR    R C  +  +DSGI   WCR+
Sbjct: 11  AGWCVDSNVRTDGGRSCDTVWTADSGIDGRWCRS 44


>06_01_0478 +
           3407882-3407999,3408119-3408278,3408377-3408448,
           3409599-3409670,3410471-3410539,3410654-3410659,
           3410951-3411022,3411103-3411174,3411881-3411935,
           3412139-3412366
          Length = 307

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 111 QNSNNVAKAAALNFIREHWSPVCGTCCHNYDP 206
           +NS N++ AAAL+ + E W    GT    Y P
Sbjct: 32  RNSTNISDAAALHTVFEKWGLEDGTMPQGYHP 63


>05_07_0059 + 27402365-27402733,27402848-27402982,27403070-27403183,
            27403297-27403449,27403544-27403644,27403945-27404041,
            27404542-27404651,27404775-27404878,27405129-27405308,
            27405398-27405741,27405841-27405905,27405981-27406450,
            27406939-27407793,27408045-27408116,27408475-27408575,
            27409069-27409170,27409295-27409456,27409665-27411230,
            27411384-27411602,27413924-27414198,27414291-27414596,
            27414727-27415012,27415085-27415087,27415162-27415416,
            27415537-27415803
          Length = 2236

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 220  VSRSDDAETEATLDVDTVTEGPVQPI 297
            +S+ D+ ET  T D+   +EG VQP+
Sbjct: 2209 LSKDDEGETNGTEDIAVSSEGLVQPV 2234


>02_01_0111 -
           825369-825428,825778-826380,826467-827267,827716-827766
          Length = 504

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 126 VAKAAALNFIREHWSPVCGTCC 191
           V + A   +++ HW P CG  C
Sbjct: 225 VTRDAKARYVKFHWKPTCGVSC 246


>03_05_0555 + 25555081-25555432,25555488-25555699
          Length = 187

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 486 RKERGCSNISDSGITRNWCRTHRCQST*LEPFHCIRE 596
           R+E  C  ++ +  +R WCR  R +     P +  R+
Sbjct: 116 REEMSCRELTGASKSRRWCRRDRMEQISTNPSNAARQ 152


>01_06_0092 - 26377011-26377613,26379581-26380168
          Length = 396

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 126 VAKAAALNFIREHWSPVCGTCCHNYD 203
           +A+A    FIRE WSP  G C ++ D
Sbjct: 43  LAQATNDAFIREAWSPHAGACRYSRD 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,684,225
Number of Sequences: 37544
Number of extensions: 360647
Number of successful extensions: 865
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)