Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0331
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.027
SB_51799| Best HMM Match : SET (HMM E-Value=0)                         33   0.25 
SB_19664| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)                      29   2.3  
SB_39231| Best HMM Match : zf-C2H2 (HMM E-Value=3.4e-31)               27   9.4  
SB_48118| Best HMM Match : DUF1314 (HMM E-Value=3.2)                   27   9.4  

>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 35.9 bits (79), Expect = 0.027
 Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 1/112 (0%)
 Frame = +3

Query: 270 SNGGTCSTNKTDEDGCEVRDIYAIRSHGYCSA-CAKCCKQISRSQFQGVTP*HSFHQRIC 446
           S  G C  +  D +GC   ++Y       C+  C   C    +S++ GVT   S     C
Sbjct: 230 SASGKCDQS-CDGEGC---NLYCSEGAKTCNQKCQGACVTDCKSRWCGVTCTGSGCDVKC 285

Query: 447 YDSGWKIIQSVRQRKERGCSNISDSGITRNWCRTHRCQST*LEPFHCIRECG 602
            ++G +      Q+    C    D+ +  + C   RCQ+       C +ECG
Sbjct: 286 PNNGTESCDQTCQKSAGDCKMRCDAKVCTSKCTDGRCQAISCGGDRCTQECG 337


>SB_51799| Best HMM Match : SET (HMM E-Value=0)
          Length = 503

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 17/61 (27%), Positives = 33/61 (54%)
 Frame = +1

Query: 214 MVVSRSDDAETEATLDVDTVTEGPVQPIKLTKMDVKSVISMRYAHTAIVAHVRNAANKSQ 393
           +++S SD++ETE T+D DT  EG ++    T  D +   S R + + +        N+++
Sbjct: 85  LLLSESDESETETTMD-DTRQEGEIEIFAATVTDEEKCTSSRSSDSIVCLEETAIPNENK 143

Query: 394 E 396
           +
Sbjct: 144 Q 144


>SB_19664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 632

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +3

Query: 30  GTRIYYW*RNVPELENQL--NKSCGVENKQNSNNVAKAAALNFIREHWSPVCGTCCHNYD 203
           GT  +    N+P  +N +   KS     ++  +NV  A     ++  ++ VC     NY 
Sbjct: 380 GTNFHSNFGNMPSSQNWVPDQKSAFQSGQRKDDNVRMATIKGPLKSSFASVCAAEPSNYT 439

Query: 204 PRDHG 218
           PR HG
Sbjct: 440 PRQHG 444


>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2937

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 522 GITRNWCRTHR--CQST*LEPFHCIRECGGFHQ 614
           G+ RNWCR ++  C+S  L+P  C  +   +H+
Sbjct: 500 GLRRNWCREYQGLCESYNLQPVTCDSDYTTYHE 532


>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
          Length = 2276

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/57 (29%), Positives = 32/57 (56%)
 Frame = +1

Query: 187 AATITTPETMVVSRSDDAETEATLDVDTVTEGPVQPIKLTKMDVKSVISMRYAHTAI 357
           A++ + P+    S SD ++ +++    +  +G  QP+  T+ DVK VI+M  A  A+
Sbjct: 798 ASSTSQPQKNQKSYSDPSQAQSS---PSPAQGTAQPVVKTEEDVKPVITMAPASQAV 851


>SB_39231| Best HMM Match : zf-C2H2 (HMM E-Value=3.4e-31)
          Length = 505

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 57  NVPELENQLNKSCGVENKQNS-NNVAKAAALNFIREHWSPVCGTCCHNYDPRDHGGIQI 230
           ++  ++N+ N    ++ +  S  NVA +A      +  S V G  C+N +P DH  + I
Sbjct: 55  SILHVQNEKNDLKLIKAEDESVGNVAHSATSGLDAQPISMVHGRLCNNEEPSDHSALVI 113


>SB_48118| Best HMM Match : DUF1314 (HMM E-Value=3.2)
          Length = 341

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +3

Query: 327 DIYAIRSHGYCSACAKCCKQISRSQFQGVT 416
           DI A RS GY S  A    Q+SRS   G+T
Sbjct: 111 DIPATRSPGYLSLSAFGSPQVSRSTTPGIT 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,529,676
Number of Sequences: 59808
Number of extensions: 430754
Number of successful extensions: 1512
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1508
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)