Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0331
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    27   0.15 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.8  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +3

Query: 63  PELENQLNKSCGVENK-QNSNNVAKA-AALNFIREHWSPV-CGTCCHNYDPRDHG 218
           P++ + L+ SC   N   N+NN  K    +N+I +   PV     C N+ PR  G
Sbjct: 301 PKIISSLSNSCNYSNNYYNNNNYKKLYYNINYIEQIPIPVPVPIYCGNFPPRPMG 355


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +3

Query: 438 RICYDSGWKIIQSVRQRKERGCSNI 512
           ++ Y   W++  ++  R E  CS I
Sbjct: 97  KVTYSGLWRVCVAISSRMEYECSRI 121


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 193 TITTPETMVVSRSDDAETEATLDVDTVTEGPVQPIKLTKMDVKSVIS 333
           TI TP T V+S S       +L   + +   +   K    DVK+ I+
Sbjct: 838 TINTPTTSVISMSGTTVPITSLPASSTSINSITVEKDVINDVKTQIT 884


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 191  PQLRPQRPWWYP 226
            PQL+PQ+P+  P
Sbjct: 1124 PQLKPQKPFTSP 1135


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 149 FYSGALVSCLWYMLPQLRPQRPW 217
           +Y   L   L+Y+L  LR   PW
Sbjct: 114 YYIIILAWALFYLLVSLRIDLPW 136


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 149 FYSGALVSCLWYMLPQLRPQRPW 217
           +Y   L   L+Y+L  LR   PW
Sbjct: 167 YYIIILAWALFYLLVSLRIDLPW 189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,503
Number of Sequences: 438
Number of extensions: 4055
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)