Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0330
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         29   0.50 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   1.1  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    26   3.5  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   4.6  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.1  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   6.1  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   6.1  
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.1  
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces...    25   8.1  

>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 29.1 bits (62), Expect = 0.50
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +3

Query: 60  LDLQRSQHELVANAENVVPTSTFS-----AINLFYVLLVPAV 170
           LD+  S ++   +A  + PTSTFS      +N F  L +PAV
Sbjct: 551 LDVSNSSNQFFCSAPKLDPTSTFSGVAQRVVNTFTNLFIPAV 592


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 22/69 (31%), Positives = 35/69 (50%)
 Frame = +1

Query: 274 NSSVDLLTSSET*FRKALTTITNPSLRSG*DLVSSSFCTILATWKSS*VVTFTSIKLRNT 453
           +SS  + TSS + F  ++TTI++    S      SS  +IL++  SS   T  SI   +T
Sbjct: 540 SSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSST 599

Query: 454 VSSNHGSET 480
            S+   + T
Sbjct: 600 SSTFSSAST 608


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 282 GGSADIFRNIVQKSADYD 335
           GG   +FR +  KS+DYD
Sbjct: 216 GGGRKLFRKVANKSSDYD 233


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 400 TWKSS*VVTFTSIKLRNTVSSNHGSETVFLSVLVKNGGLIVNLSPPHS 543
           T+ SS  V +  +    + +++H S T F+      GGL  NLS P S
Sbjct: 96  TFGSSNFVPYNLLSNTPSFTTSHSSSTTFVPPATMGGGL-NNLSSPSS 142


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +3

Query: 297 IFRNIVQKSADYDHESVVKIWIGPRLLVFLYDPRDVEVILSSHVYIDKAEEYRF 458
           + ++++ K+    +E+ V+ +    +L+      DVE + S  +YID  E+Y F
Sbjct: 485 VMQSLLSKATSATNENSVRAFWAFMVLL----KSDVETVDSLEMYIDSLEQYSF 534


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 439 KLRNTVSSNHGSETVFLSVLVKNGGL 516
           K+++ ++S HG  TV  S+L+ N G+
Sbjct: 55  KVKDYIAS-HGGHTVITSILIANNGI 79


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +3

Query: 81  HELVANAENVVPTSTFSAINLFYVLLVPAVILWYAYWRMSRRRLYELADKLN 236
           ++ ++N  NV   +T S I LF+  +    +  + +W+   R L  L D+L+
Sbjct: 250 YKSLSNLVNVWLKTTRSLIKLFHDQISKTALEEFNFWQFYYRSLSRLNDQLH 301


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 216 HTTAALTFASRRTRGLRPAQVTHRR 142
           HT AA+  A    RG R   V HR+
Sbjct: 42  HTAAAVKEAFSENRGFRTCHVCHRK 66


>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 348

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = -1

Query: 515 RPPFLTSTDKKTVSEPWFEETV--FLSFIDVNVTTQDDFHVARIVQKD 378
           RPPF+T  D  T    W    +  F+S I  NV T    H     Q+D
Sbjct: 225 RPPFITQCDTATGDNYWAGTYMGDFVSNI-TNVLTNSTGHYCTTQQED 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,990
Number of Sequences: 5004
Number of extensions: 43603
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)