Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0328
         (635 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CF809 Cluster: hypothetical protein TTHERM_0054...    34   3.3  
UniRef50_Q7RTA0 Cluster: Sec7 domain, putative; n=12; Plasmodium...    33   7.6  

>UniRef50_UPI00006CF809 Cluster: hypothetical protein
           TTHERM_00543660; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00543660 - Tetrahymena
           thermophila SB210
          Length = 1166

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +1

Query: 298 QFSYKVLLMCVKQKCNDDKKNLMSIFNRRAISII 399
           Q +YK+ L C KQ C ++K+NL+++ +   I II
Sbjct: 343 QLAYKIQLNCQKQICYEEKRNLINLPSNEVIYII 376


>UniRef50_Q7RTA0 Cluster: Sec7 domain, putative; n=12; Plasmodium
           (Vinckeia)|Rep: Sec7 domain, putative - Plasmodium
           yoelii yoelii
          Length = 2999

 Score = 32.7 bits (71), Expect = 7.6
 Identities = 21/90 (23%), Positives = 41/90 (45%)
 Frame = -3

Query: 633 LDCNHISTEFQFDQLSIILLHNRSLQELVKIVRLKPIFRS*VNIYKVVNDKKYCLYGIRN 454
           ++ N+IS E +      ++L N  L   +K+V  K I +    ++K+  + KY L    N
Sbjct: 268 INYNNISHE-EIILYDTVVLFNNILNNAIKVVDRKNIIKIICYLFKIYKNNKYSLLFKTN 326

Query: 453 VNVS*KHVNFLTMHLSTKNNANRTTVKNGH 364
                K++ ++ ++     N   T + N H
Sbjct: 327 CEALLKNILYIVINSVIVTNTIDTHLMNNH 356


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 536,191,746
Number of Sequences: 1657284
Number of extensions: 10168076
Number of successful extensions: 19627
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19619
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)