Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0328
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    26   4.0  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    26   4.0  
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    25   6.9  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    25   9.1  
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|...    25   9.1  

>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 156 EKQLFNELYFIRILRCVSV**FLFCHKIKSLIYLF 52
           EK+L  EL     L  +S   F F H+I +LIYL+
Sbjct: 418 EKKLIKEL--TSYLEALSAKGFAFSHEISTLIYLY 450


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 292 IPQFSYKVLLMCVKQKCNDDKKNLMSIFNRRAISII 399
           IP+F+Y  L  C +    D +KN +  F  R I +I
Sbjct: 387 IPEFAYHFLQTCSRLVNIDIRKNGVVSFENRQIDVI 422


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 263 IMTIKLKNELSRNLAIK 313
           + T++ KNEL RN+ IK
Sbjct: 46  VHTVRFKNELERNITIK 62


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 617 FRQSFNSINYQLSCFIIEAFKNW*KLSDLNPF 522
           FR ++  +NY+  C  ++ ++ W +LS    F
Sbjct: 629 FRDAYELMNYRALCRALKFYQEWEELSKQEVF 660


>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 116 CVAYQYSNFCSATKLNLLFICFNLKILF*LSTLVPNSC 3
           CV     +  S  +  LL + F ++I F    L+P +C
Sbjct: 252 CVTLPVPSLLSFARSVLLTVSFEIRIRFSAEPLIPRNC 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,645
Number of Sequences: 5004
Number of extensions: 48835
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)