Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0328
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0055 - 7863410-7863530,7864205-7864314,7864341-7864553,786...    29   4.1  

>05_03_0055 -
           7863410-7863530,7864205-7864314,7864341-7864553,
           7865342-7865406,7865511-7865635,7865936-7866164,
           7866270-7866348
          Length = 313

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
 Frame = +3

Query: 147 IVFLLSII*RTNVFFIYLPKHL---FTSETTIIN-KIICVRILL 266
           +VF++ I   TN+++I++ +HL   F+   TI N +I CV  +L
Sbjct: 239 LVFIIIIHSATNLYYIFIIRHLAWNFSGNETIPNTRISCVMFVL 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,758,315
Number of Sequences: 37544
Number of extensions: 213688
Number of successful extensions: 329
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)