Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0328
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031632-4|CAA21007.1|  451|Caenorhabditis elegans Hypothetical ...    31   0.69 
U80837-7|AAB37907.1|  760|Caenorhabditis elegans Hypothetical pr...    28   4.9  

>AL031632-4|CAA21007.1|  451|Caenorhabditis elegans Hypothetical
           protein Y32B12B.5 protein.
          Length = 451

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 326 ASNKNVMTIKKI*CPFLTVVRLALFLVLKCIVRKFTCFHE 445
           + +++  T  ++ C F  VV    ++ L+CI +  +CFHE
Sbjct: 84  SQDQSNQTTPRLHCQFSHVVPKIEYMFLRCITKHISCFHE 123


>U80837-7|AAB37907.1|  760|Caenorhabditis elegans Hypothetical
           protein F07E5.8 protein.
          Length = 760

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/50 (32%), Positives = 31/50 (62%)
 Frame = -3

Query: 591 LSIILLHNRSLQELVKIVRLKPIFRS*VNIYKVVNDKKYCLYGIRNVNVS 442
           L ++  HN +L+ + K++RLK  FRS  + +  +N +++ L+  R  N+S
Sbjct: 270 LDVVGSHN-NLRSVRKLIRLKDEFRSIDDKWMSLNKQEHYLFMHRIANIS 318


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,088,132
Number of Sequences: 27780
Number of extensions: 260618
Number of successful extensions: 495
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)