Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0327
(595 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 56 4e-09
SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofacto... 54 1e-08
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 32 0.055
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 29 0.39
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.51
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3... 28 0.89
SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces pomb... 27 1.6
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 27 2.7
SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|c... 26 4.8
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 25 6.3
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 25 6.3
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 8.3
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 25 8.3
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 56.0 bits (129), Expect = 4e-09
Identities = 26/61 (42%), Positives = 36/61 (59%)
Frame = +2
Query: 317 IGERVWVGGTKPGQIAYIGETQFAPGEWAGIVLDEPIGKNDGSVAGVRYFQCPEKRGVFS 496
+G+ V + G + G + + G T F G W G+ L GKNDGSV G RYF C + +G+F
Sbjct: 6 VGDEVLIRG-ELGIVRFAGSTDFESGIWLGVELLNGKGKNDGSVKGKRYFSCEKGKGIFV 64
Query: 497 R 499
R
Sbjct: 65 R 65
>SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofactor
B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 54.4 bits (125), Expect = 1e-08
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 317 IGERVWVGGTKPGQIAYIGETQFAPGE--WAGIVLDEPIGKNDGSVAGVRYFQCPEKRGV 490
+ R G + G I YIG + W G+ DEP+GKNDG+V+G RYF K G
Sbjct: 154 LNSRCCAAGERYGTIRYIGLVPEINNDNLWVGVEFDEPVGKNDGTVSGKRYFNAKNKHGS 213
Query: 491 FSR 499
F R
Sbjct: 214 FLR 216
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 32.3 bits (70), Expect = 0.055
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 118 PNFKSRTNSIIQ-RNFFFENHKMPVETKISFSDGSSTDTLRKLSDDLSRKHLS 273
PNF T ++I EN +PV +KI+ + DTL +++D LSR H+S
Sbjct: 100 PNFNLETKNLISISKKLSENENLPV-SKIA-EVTNELDTLVRINDQLSRNHIS 150
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 29.5 bits (63), Expect = 0.39
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 423 QLVKTMDQWQAFVIFNVQRNEVCFLD*LDSLEFPSLYTHRTMHRPCRM 566
Q V + Q F++F + N C+LD ++ +LY + PC M
Sbjct: 500 QFVHNLSQKLLFLVFQLSTNTNCYLDSKNATSLLALYINALKVFPCLM 547
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1379
Score = 29.1 bits (62), Expect = 0.51
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +1
Query: 121 NFKSRTNSIIQRNFFFENHKMPVETKISFSDGSSTDTLRKLSDDLSRKHLSDHSGDID 294
+F R S+ +P++ K+S S SST +++ L + ++KH+ + D
Sbjct: 835 DFSRREASLSDSQSAASMDMLPMKKKLSHSSASSTRSIKSLLTNANQKHIHSSINETD 892
>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 555
Score = 28.3 bits (60), Expect = 0.89
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -1
Query: 397 LSGSK--LRFSDISNLSRFRTAYPNTFTNNEAIGVLCQY 287
L+GSK LRF+ + RFR +P T+ N E I ++ +
Sbjct: 150 LTGSKAHLRFTG-PQIKRFRRLHPETYENTERIALVSNF 187
>SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 353
Score = 27.5 bits (58), Expect = 1.6
Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Frame = +2
Query: 59 ITQVATREGTL--RDTITNYVFRTSNRGLIR*SKGIFFLKIIRCPSKPKLAFPTAARRTR 232
+T VA G L R+ TN N L SK + P P F + A T
Sbjct: 172 LTGVAVYVGALFFREKFTNLGHTWQNSILFDKSKKSILTCLHYFPRDPSQPFRSQASLTL 231
Query: 233 *GSLVTTYLENTYQT 277
G L+ L+N Y T
Sbjct: 232 DGKLIAVLLDNEYST 246
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 222 RAAVGKANFGFDGHLMIFKKKIPLDYRISPRFEVRKT 112
R VG +F F + ++ IPL + + PRF+ R +
Sbjct: 535 REIVGYVHFFFSIGCVAYQSFIPLPFLLGPRFKFRSS 571
>SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 127 KSRTNSIIQRNFFFENHKMPVETKISFSDGSSTDTLRKL 243
K T+ + R+FF E + E + FSDGS + R L
Sbjct: 154 KLETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIHTRSL 192
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 80 EGTLRDTITNYVFRTSNRGLIR*SKGIFFLKII 178
EG LRD +T N LIR S FF K++
Sbjct: 152 EGKLRDLLTKCASTAMNSKLIR-SNSTFFTKMV 183
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -3
Query: 500 IEKTHLVSLDIENNERLPLIHRFYQLARRVLSQPTLREQTAFLR 369
++ +H DIE+ + L +IHR Y + R+ L + A L+
Sbjct: 896 LDLSHNYISDIESLKPLQMIHRLYLVGNRIKKMRNLCDILANLK 939
>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 25.0 bits (52), Expect = 8.3
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -2
Query: 456 TPATDPSFLPIGSSSTIPAHSPGANCVSPI*AICPGFVPPTQTRS 322
+PAT + P S STIP C++P C F+ PT++R+
Sbjct: 234 SPATVTTLPPFMSMSTIPIPCKYKPCLNP---AC-RFIHPTKSRN 274
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/32 (31%), Positives = 12/32 (37%)
Frame = +1
Query: 10 SNSFARFQRHTRPAHLHHAGRHQGRHTPRYNH 105
S S H LHH G H H ++H
Sbjct: 279 SGSTNHHNNHESDKDLHHEGHHHHHHHHHHHH 310
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,087
Number of Sequences: 5004
Number of extensions: 54877
Number of successful extensions: 167
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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