Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0327
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1698 - 35458500-35458547,35458919-35458988,35459626-354597...    59   3e-09
05_01_0038 + 260080-260380,260852-261022,261764-261810,262266-26...    48   6e-06
02_04_0090 - 19643182-19643322,19644192-19644335,19644563-196446...    30   1.2  
09_06_0176 + 21351884-21352693,21352821-21352976,21353425-213536...    29   2.8  
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140...    29   2.8  
08_02_0644 - 19658270-19658626,19659142-19659218,19659256-196594...    29   3.7  
03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779     29   3.7  
10_02_0079 + 5016115-5016936                                           28   6.5  
01_01_0628 - 4731052-4731601,4731825-4732782,4733143-4733953,473...    28   6.5  
03_06_0737 + 35879723-35879990,35880105-35880201,35880464-358805...    27   8.5  

>04_04_1698 -
           35458500-35458547,35458919-35458988,35459626-35459759,
           35460671-35460712,35460786-35460824
          Length = 110

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
 Frame = +2

Query: 317 IGERVWVG-GTKPGQIAYIGETQ-FAPGEWAGIVLDEPIGKNDGSVAGVRYFQCPEKRGV 490
           +G+R  V  G K G + ++G  +    G W G+  DEP+GK+DG V G+R+F+CP+  G 
Sbjct: 28  VGDRCEVEPGAKRGTVKFVGRAEALGRGFWVGVQYDEPLGKHDGMVKGIRFFECPQGHGA 87

Query: 491 FSR 499
             R
Sbjct: 88  IVR 90


>05_01_0038 +
           260080-260380,260852-261022,261764-261810,262266-262412,
           262495-262569,262826-262935,263032-263159,263368-263429,
           263599-263748,263827-263861,264083-264151,264538-264629,
           264718-264794,265434-265532
          Length = 520

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
 Frame = +2

Query: 308 SFIIGERVWVGG--TKPGQIAYIGETQFAPGEWAGIVLDEPI-GKNDGSVAGVRYF-QCP 475
           +F +G+RV   G   + G + Y+G     PG+W G+  D    G++DGS+AG RYF    
Sbjct: 5   AFRLGQRVHAAGDPARVGTVRYLGPVDGHPGDWLGVDWDAGAGGRHDGSLAGRRYFVAAG 64

Query: 476 EKRGVFSRLTRLT 514
           E+   F+R T L+
Sbjct: 65  ERSASFARPTALS 77


>02_04_0090 -
           19643182-19643322,19644192-19644335,19644563-19644626,
           19644710-19644796,19645371-19645513,19645706-19645771,
           19645954-19646046,19646165-19646230,19646363-19646433,
           19646882-19646982,19647217-19647317,19647421-19647528,
           19647639-19648064
          Length = 536

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 37  HTRPAHLHHAGRHQGRHTPRYNHKLR 114
           H R AH HH GRH    +PR+ H +R
Sbjct: 44  HLRVAH-HHHGRHPHPPSPRWRHDVR 68


>09_06_0176 + 21351884-21352693,21352821-21352976,21353425-21353613,
            21354741-21356354,21356446-21356553,21356649-21357509,
            21357586-21357632,21358591-21358697,21359512-21359630,
            21359706-21359915,21360412-21360693,21360820-21360952,
            21361256-21361413,21362564-21362647,21362949-21363035
          Length = 1654

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 169  ENHKMPVETKISFSDGSSTDTLRKLSD 249
            E ++ P  T +S SDG+STD + K SD
Sbjct: 1237 EANQKPENTTLSCSDGTSTDVIDKQSD 1263


>03_06_0572 +
           34812203-34812278,34812485-34813768,34813973-34814049,
           34814299-34814646
          Length = 594

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 453 PATDPSFLPIGSSSTIPAHSPGANCVSPI*AICPGFVPPT 334
           P T+P+  P  +  T+PA +P  N V+P     P   P T
Sbjct: 246 PVTNPTTTPATNPVTVPATNPAMNPVTPGIVTVPSTNPAT 285


>08_02_0644 -
           19658270-19658626,19659142-19659218,19659256-19659430,
           19659543-19659596,19659691-19659858,19660756-19660953,
           19661546-19661632,19661739-19661827,19662499-19662955
          Length = 553

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = -2

Query: 360 ICPGFVPPTQTRSPIMKLSVSSV--NITAVV 274
           +CPGFV  ++T SP M L+  S+  N+T V+
Sbjct: 364 LCPGFVLLSRTTSPGMVLTTGSIPLNMTKVI 394


>03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779
          Length = 704

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/30 (53%), Positives = 17/30 (56%)
 Frame = -1

Query: 94  SECAFPGGDLRDADARVVCVVETARMNCSP 5
           SE A    DLRD DAR V V + AR N  P
Sbjct: 82  SERAGSQRDLRDEDARFVYVNDAARTNAPP 111


>10_02_0079 + 5016115-5016936
          Length = 273

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -2

Query: 429 PIGSSSTIPAHSPGANCVSPI*AICPGFVPPTQTRSPI 316
           P    + IPA +P AN +S      P   PP  T  P+
Sbjct: 22  PTNPRNAIPAANPAANPISGAAHSAPANAPPPATECPV 59


>01_01_0628 -
           4731052-4731601,4731825-4732782,4733143-4733953,
           4734038-4734241,4734695-4734802,4735930-4736369,
           4736463-4736541
          Length = 1049

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 490 HTSFLWTLKITNACH 446
           H   LWTLK  N+CH
Sbjct: 511 HNIILWTLKFANSCH 525


>03_06_0737 +
           35879723-35879990,35880105-35880201,35880464-35880591,
           35880686-35880767,35880855-35880918,35880930-35881022,
           35881120-35881178,35881391-35881826,35882050-35882120,
           35882201-35882351
          Length = 482

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +2

Query: 407 IVLDEPIGKNDGSVAGVRYFQCPEKRGVFSRLTRLTRVPFAIHT--PHDASPVS 562
           +V  +P+ K +G+V  ++YF+  E R  +  + RL    F  HT    D  P S
Sbjct: 11  VVQFKPLLK-EGAVYYIKYFEVAEARPQYRPVDRLLMAKFTAHTTVTEDTGPPS 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,106,738
Number of Sequences: 37544
Number of extensions: 360890
Number of successful extensions: 1003
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)