Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0327
(595 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g10220.1 68416.m01223 tubulin folding cofactor B identical to... 62 2e-10
At1g71440.1 68414.m08253 tubulin folding cofactor E / Pfifferlin... 43 2e-04
At5g23350.1 68418.m02731 GRAM domain-containing protein / ABA-re... 32 0.25
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 31 0.44
At1g56415.1 68414.m06488 Expressed protein 31 0.58
At4g34490.1 68417.m04903 cyclase-associated protein (cap1) ident... 29 1.8
At4g15180.1 68417.m02328 SET domain-containing protein contains ... 29 1.8
At3g52640.2 68416.m05800 nicastrin-related contains weak similar... 29 2.3
At3g52640.1 68416.m05799 nicastrin-related contains weak similar... 29 2.3
At4g01560.1 68417.m00202 brix domain-containing protein contains... 29 3.1
At4g39720.1 68417.m05622 VQ motif-containing protein contains PF... 28 4.1
At4g37890.2 68417.m05359 zinc finger (C3HC4-type RING finger) fa... 28 5.4
At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finger) fa... 28 5.4
At3g45650.1 68416.m04931 proton-dependent oligopeptide transport... 27 7.1
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 27 9.4
At3g13300.2 68416.m01675 transducin family protein / WD-40 repea... 27 9.4
At3g13300.1 68416.m01674 transducin family protein / WD-40 repea... 27 9.4
At2g28610.1 68415.m03478 homeobox-leucine zipper transcription f... 27 9.4
>At3g10220.1 68416.m01223 tubulin folding cofactor B identical to
tubulin folding cofactor B GI:20514259 from [Arabidopsis
thaliana]; identical to cDNA tubulin folding cofactor B
GI:20514258
Length = 243
Score = 62.5 bits (145), Expect = 2e-10
Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = +2
Query: 317 IGERVWVG-GTKPGQIAYIGETQ-FAPGEWAGIVLDEPIGKNDGSVAGVRYFQCPEKRG 487
+G+R V G K G + Y+G + PG W GI DEP+GK+DG V G R+F+CP +G
Sbjct: 161 VGDRCQVEPGEKRGMVKYVGRAESLGPGYWVGIQYDEPLGKHDGMVKGTRFFECPRLQG 219
>At1g71440.1 68414.m08253 tubulin folding cofactor E / Pfifferling
(PFI) almost identical to tubulin folding cofactor E
(Pfifferling; PFI) GI:20514267 from [Arabidopsis
thaliana]; identical to cDNA tubulin folding cofactor E,
GI:20514266
Length = 531
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Frame = +2
Query: 305 DSFIIGERVWV--GGTKPGQIAYIGETQFAPGEWAGIVLDEP-IGKNDGSVAGVRYF 466
+SFIIG+RV + G + Y+G+ + G W G+ D+ GK++GSV GV YF
Sbjct: 8 ESFIIGQRVHSLNDSRRVGTVKYVGDVEGYSGTWIGVDWDQDGDGKHNGSVNGVFYF 64
>At5g23350.1 68418.m02731 GRAM domain-containing protein /
ABA-responsive protein-related contains similarity to
ABA-responsive protein in barley (GI:4103635) [Hordeum
vulgare] [J. Exp. Bot. 50, 727-728 (1999); contains Pfam
PF02893: GRAM domain
Length = 280
Score = 32.3 bits (70), Expect = 0.25
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 109 LRFPNFKSRTNSIIQRNFFFENHKMPVETKISFSDGSSTDTLRKLSDD 252
+ FP K+ T S + NH++P +K+S+ G LRK D
Sbjct: 73 IAFPAAKTDTMSYLPDPASINNHQIPTSSKVSYLTGKGKSMLRKKKTD 120
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 1648
Score = 31.5 bits (68), Expect = 0.44
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 172 NHKMPVETKISFSDGSS-TDTLRKLSDDLSRKHLSDHSGDIDRGHR*LHYW*TC 330
+H+ P E +IS S+GSS TD L L R+ + G + H+ W C
Sbjct: 362 SHRKPAEDEISVSNGSSVTDVLNAGLRRLKRERVECICGAVSESHKYKGVWVQC 415
>At1g56415.1 68414.m06488 Expressed protein
Length = 94
Score = 31.1 bits (67), Expect = 0.58
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 103 DCISECAFPGGDLRDADARVVCVVETARMNCSP 5
DCI CAFPG + + + R +C + + C P
Sbjct: 45 DCIIHCAFPGSESKISQPRALC-LRNCDVGCRP 76
>At4g34490.1 68417.m04903 cyclase-associated protein (cap1)
identical to cyclase-associated protein (cap1)
GI:3169136 from [Arabidopsis thaliana]
Length = 476
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 208 SDGSSTDTLRKLSDDLSRKHLSDHSGDI 291
S G+ T LRK++DD+ K+ +D SG +
Sbjct: 270 SSGAVTSGLRKVTDDMKTKNRADRSGAV 297
>At4g15180.1 68417.m02328 SET domain-containing protein contains
Pfam profile PF00856: SET domain
Length = 2326
Score = 29.5 bits (63), Expect = 1.8
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +1
Query: 85 HTPRYNHKLRFPNFKSRTNSIIQRNFFFENHKMPVETKISFSDGSS--TDTLRKLSDDLS 258
H YN+ F S T + ++R+ + +E K S++D + RKLSDD S
Sbjct: 316 HKNEYNNSSNFVKEYSSTGNRLKRHGAEPDS---IERKHSYADYGDYGSSKCRKLSDDCS 372
Query: 259 RKHLSDH 279
R SDH
Sbjct: 373 RSLHSDH 379
>At3g52640.2 68416.m05800 nicastrin-related contains weak similarity
to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
sapiens]
Length = 705
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 365 YIGETQFAPGEWAGIVLDEPIGK 433
YI T PG +AG++L EP K
Sbjct: 535 YISPTNTCPGNYAGVILGEPSSK 557
>At3g52640.1 68416.m05799 nicastrin-related contains weak similarity
to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
sapiens]
Length = 676
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 365 YIGETQFAPGEWAGIVLDEPIGK 433
YI T PG +AG++L EP K
Sbjct: 506 YISPTNTCPGNYAGVILGEPSSK 528
>At4g01560.1 68417.m00202 brix domain-containing protein contains
Pfam domain, PF04427: Brix domain
Length = 343
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +1
Query: 118 PNFKSRTNSII--QRNF-FFENHKMPVETKISFSDGSSTDTLR 237
PNF+ R QR+F FF +H+ ETK S SD +T++
Sbjct: 255 PNFRGRRVVTFHNQRDFIFFRHHRYIFETKESKSDKGKEETIK 297
>At4g39720.1 68417.m05622 VQ motif-containing protein contains
PF05678: VQ motif
Length = 290
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 58 HHAGRHQGRHTPRYNHKLRFPNFKSRTNSIIQRNFFFENHKMPV 189
HH TP+ NH+ + NS+I N+F N +PV
Sbjct: 38 HHNNHVSSIPTPQQNHRNLLHFDHNNNNSLIPPNYFNNNTFLPV 81
>At4g37890.2 68417.m05359 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 711
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 420 SSSTIPAHSPGANCVSPI*AICPGFVPPTQTRSPIMKLSVSSVNIT 283
S++ I SP + G V PT+ RSP+ LSVSS + T
Sbjct: 67 SATAISTPSPSLPASPKLQCDTSGDVTPTRNRSPLSFLSVSSSSST 112
>At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 739
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 420 SSSTIPAHSPGANCVSPI*AICPGFVPPTQTRSPIMKLSVSSVNIT 283
S++ I SP + G V PT+ RSP+ LSVSS + T
Sbjct: 67 SATAISTPSPSLPASPKLQCDTSGDVTPTRNRSPLSFLSVSSSSST 112
>At3g45650.1 68416.m04931 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 558
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 248 TTYLENTYQTTAVILTEDTDSFIIG 322
TTYL TA++ TED S+ +G
Sbjct: 185 TTYLAGAISATAIVYTEDNISWTLG 209
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 492 NTPRFS-GH*K*RTPATDPSFLPIGSSSTIPAHSPGANCVSP 370
+TP S H +PA PS P + S PAHSP + +P
Sbjct: 235 HTPSHSPAHAPSHSPAHAPSHSPAHAPSHSPAHSPSHSPATP 276
>At3g13300.2 68416.m01675 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1309
Score = 27.1 bits (57), Expect = 9.4
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Frame = +2
Query: 425 IGKNDGSVAGVRYFQCPEKRGVFSRLTRLTRV-------PFAIHTPHDASPVSDAGSVF- 580
+GK+DG V + Q R V S + ++ P + PHD PVS A V
Sbjct: 317 VGKHDGEVTDLSMCQWMTTRLVSSSVDGTIKIWQDRKAQPLVVLRPHDGHPVSSATFVTS 376
Query: 581 -ERP 589
ERP
Sbjct: 377 PERP 380
>At3g13300.1 68416.m01674 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1344
Score = 27.1 bits (57), Expect = 9.4
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Frame = +2
Query: 425 IGKNDGSVAGVRYFQCPEKRGVFSRLTRLTRV-------PFAIHTPHDASPVSDAGSVF- 580
+GK+DG V + Q R V S + ++ P + PHD PVS A V
Sbjct: 352 VGKHDGEVTDLSMCQWMTTRLVSSSVDGTIKIWQDRKAQPLVVLRPHDGHPVSSATFVTS 411
Query: 581 -ERP 589
ERP
Sbjct: 412 PERP 415
>At2g28610.1 68415.m03478 homeobox-leucine zipper transcription
factor (PRESSED FLOWER) identical to PRESSED FLOWER
(GP:17907768) {Arabidopsis thaliana}
Length = 244
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +1
Query: 37 HTRPAHLHHAGRHQGRHTPRYNH 105
H P H HH H H P Y+H
Sbjct: 110 HHNPYHHHHHNHHHNHHRP-YDH 131
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,555,668
Number of Sequences: 28952
Number of extensions: 287858
Number of successful extensions: 840
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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