Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0325
         (524 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   2.3  
SB_13245| Best HMM Match : Ion_trans (HMM E-Value=3.3e-25)             28   5.4  
SB_37093| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  

>SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1120

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 112 DVTVIDYDRYNLSGHHQKKCWCDKTD 35
           D + +DY  Y L   H+  CWC   D
Sbjct: 790 DGSAVDYGTYTLVQCHEGYCWCSSPD 815


>SB_13245| Best HMM Match : Ion_trans (HMM E-Value=3.3e-25)
          Length = 816

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 288 RTCSLSGLRTASQNH-HPSSSWTHPSLPS 205
           +T  LS L T S  H HP+  W+ P LPS
Sbjct: 319 QTSWLSILATESNKHFHPTDPWSGPYLPS 347


>SB_37093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
 Frame = -2

Query: 514 IVSSIGLKSLKCLLLYFWLSNFTFADIAIMFAVRSSISLRKRAMWISLTITR------TS 353
           I+SS    + +C L   WL +F  A +A +  +  S  +R  A  +++   R       S
Sbjct: 46  ILSSCKRPTYRCALTSGWLRSFINAFLAALNVLALSERIRLGAPRLAINFLRHRLKVDAS 105

Query: 352 NANSSPMIVAVTVTTQAFIRRSHLFIVGPPYCLSKSPPIK 233
            +++SP   A+ VT Q  +      ++ PP  ++KS P K
Sbjct: 106 MSSTSPKCTAL-VTQQ--VNNVIYTLLMPPVDVTKSGPAK 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,137,710
Number of Sequences: 59808
Number of extensions: 364182
Number of successful extensions: 1062
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)