Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0325
         (524 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33380.1 68417.m04745 expressed protein                             29   1.4  
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica...    29   1.9  
At1g12570.1 68414.m01459 glucose-methanol-choline (GMC) oxidored...    29   1.9  
At5g49770.1 68418.m06164 leucine-rich repeat transmembrane prote...    28   4.4  
At1g09570.1 68414.m01073 phytochrome A (PHYA) identical to SP|P1...    28   4.4  
At4g11530.1 68417.m01850 protein kinase family protein contains ...    27   7.7  

>At4g33380.1 68417.m04745 expressed protein
          Length = 328

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +1

Query: 1   HTSYVHSALKWGLSYHTSISSDDDLINCIDRSQ 99
           HT Y  +A++WGL++H   S+ D    C+D+++
Sbjct: 223 HTDYGGAAVRWGLTHHKE-SAADCCQACLDQAK 254


>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
            domain-containing protein similar to transcriptional
            activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
            profiles PF00271: Helicase conserved C-terminal domain,
            PF00176: SNF2 family N-terminal domain
          Length = 2055

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
 Frame = +3

Query: 372  REIHIARLRSE--IDD---LTANMIAMSANVKLLNQKYNNKHFNDFKPME 506
            RE+HI RL SE  I++     AN   +  N+ + N +YN + F    PME
Sbjct: 1191 REVHIYRLISESTIEENILKKANQKRVLDNLVIQNGEYNTEFFKKLDPME 1240


>At1g12570.1 68414.m01459 glucose-methanol-choline (GMC)
           oxidoreductase family protein similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|P52707];
           contains Pfam profile PF00732 GMC oxidoreductase
          Length = 572

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 283 LFIVGPPYCLSKSPPIKFLDASFTSFMVSFCVYIVIGSGMSACFSAITV 137
           LF+  P     K+P   F+  +  S   S+  YI+IG G + C  A T+
Sbjct: 16  LFLHSPICSSDKAPNYSFMRDATGSPTTSYYDYIIIGGGTAGCPLAATL 64


>At5g49770.1 68418.m06164 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 946

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = -1

Query: 209 LHGFLLRVHRNRVWYECVLLGHHCVNTAPANGRCHC-Y*LRSIQFIRSSS 63
           L G+   V  N  +      G+HC      N  CHC Y L  +  +RS S
Sbjct: 405 LSGYCNAVQPNSTFSTLTKCGNHCGKGKEPNQGCHCVYPLTGVFTLRSPS 454


>At1g09570.1 68414.m01073 phytochrome A (PHYA) identical to
           SP|P14712 Phytochrome A {Arabidopsis thaliana}
          Length = 1122

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 305 SFHSPIALVHCRASVLPLKITTHQVLGRIL 216
           S  +PI LVHCR S  P     H+V G I+
Sbjct: 151 SLLNPI-LVHCRTSAKPFYAIIHRVTGSII 179


>At4g11530.1 68417.m01850 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 931

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 286 HLFIVGPPYCLSKSPPIKFLDASFTSFMVSFCVYIVIGSGMSACFS 149
           ++ +  PP  LS +PP +  D  FT+F++ F + +   +    CFS
Sbjct: 247 NITLPSPPPPLSLTPPHEAKDFVFTNFLI-FLISLDSVTAQEICFS 291


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,612,173
Number of Sequences: 28952
Number of extensions: 241043
Number of successful extensions: 706
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)