Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0324
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    28   1.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.1  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   2.8  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    27   2.8  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   5.0  
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     25   6.5  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.7  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    25   8.7  
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    25   8.7  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    25   8.7  

>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +3

Query: 273 NFLPALQSCYL*SQVRTRLRARIQNCINKSEQNEIKREK 389
           +F+PA+  C L  +    LRA  Q+C++ +   + + +K
Sbjct: 699 DFVPAVGHCKLCGKYSNELRAHYQDCVSSTIDRQYQSKK 737


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 520 PLPHLDSYFPQPFTGASGSKVPRLLSSY 437
           P+PH     P+ + G SG+ VP  LSS+
Sbjct: 282 PIPHPFLGVPKVYRGGSGTTVPLNLSSF 309


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 530 IQETITTSRFLFSATLHRRIGVKSAPVVVELP 435
           + ET+T+    F+ T+   +G  +  VVV++P
Sbjct: 691 VTETVTSGSVEFTTTIATPVGTTAGTVVVDIP 722


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = +1

Query: 184 FLLYCDHRYNHHLFTGNTKEMRRNREFRSQI-FCRLFNLVIYSLKLERDCELAYRTALIK 360
           FLL+C    +  +   +  E+R+  E    + +  +  +V+YSL+  +D E+  R   + 
Sbjct: 480 FLLFCIANGSERIIILSLIELRKTIEENKDVDYQIILPVVLYSLQ-SKDTEVRSRALNLI 538

Query: 361 VNKMRLNGKNKQYFLQYTVMRNN 429
           +  + L  +N ++ + Y +  N+
Sbjct: 539 LTFLELRNENLEFSIIYGMDDND 561


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 530 IQETITTSRFLFSATLHRRIGVKSAPVVVELP 435
           + ET+T+    F+ T+   +G  +  VVV++P
Sbjct: 828 VTETVTSGSVGFTTTIATPVGTTAGTVVVDVP 859


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 178 SRFLLYCDHRYNHHLFTGNTKEMRRNR 258
           +RF+L CD +Y +  F     E RRN+
Sbjct: 296 ARFILDCDRKYFNTEFEKRMLEERRNK 322


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/41 (21%), Positives = 25/41 (60%)
 Frame = +1

Query: 313 KLERDCELAYRTALIKVNKMRLNGKNKQYFLQYTVMRNNRF 435
           +L  DC++  R++L + +   +  K K+Y+++  ++++  F
Sbjct: 240 RLSNDCDMKGRSSLSRTSSPVVEKKLKRYYIRVLLVQSITF 280


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 106 NVPSELSDCAELILSKIEVSCSPGIH*FR 20
           +VP ++ DC ELI S+I+   S G+  F+
Sbjct: 35  DVPDDV-DCVELIQSRIQSMASLGLERFK 62


>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 130 VHGSAVSVNVPSELSDCAELILSKIEV 50
           VHG  ++ ++PS+  D  E  + KI++
Sbjct: 68  VHGGILARDIPSDEKDLVEQSIEKIDI 94


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 336 RIQNCINKSEQNEIKREKQAV 398
           R+Q  INK     I+REK+A+
Sbjct: 603 RVQEEINKRNAERIRREKEAI 623


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,247,648
Number of Sequences: 5004
Number of extensions: 43690
Number of successful extensions: 121
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)